Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2067 102 5e-17 seq2970 96.9 2e-15 seq10184 93.3 3e-14 seq8832 87.8 1e-12 seq3991 87.8 1e-12 seq1539 87.8 1e-12 >seq2067 Length=34267 Score = 102 bits (112), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34204 CTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAG 34263 ||| ||||||||||||| ||| || |||| |||| || ||||| ||||| ||||| Sbjct 29579 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAG 29638 Query 34264 CCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTA 34322 |||||||||| || |||| | || ||||||||| ||||| ||| | | | | Sbjct 29639 TCGCTGCTGGTCCGGCGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCA 29697 Query 34323 TCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGA 34382 | |||| |||| || || |||| ||||| || || ||||| || || ||||| |||| Sbjct 29698 CTGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGA 29757 Query 34383 TCTGCATCGC 34392 | ||||| || Sbjct 29758 TTTGCATGGC 29767 >seq2970 Length=24236 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | || |||||| || ||||||||||||| || ||| | || Sbjct 14253 CAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATC 14194 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| || || ||||| ||||| ||||| ||||| || || | | ||||||||| Sbjct 14193 TTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTC 14134 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||| | || | ||| | ||| | ||| |||| || ||||| Sbjct 14133 CTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGT 14074 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| ||||| || ||||||||||| |||||||| Sbjct 14073 TTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq10184 Length=3342 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34204 CTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAG 34263 ||| ||||||||||||| ||| || |||| |||| || ||||| ||||| || || Sbjct 787 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAG 846 Query 34264 CCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTA 34322 |||||||||| || |||| | || |||||||| ||||| ||| | | | | Sbjct 847 TCGCTGCTGGTCCGGCGGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCA 905 Query 34323 TCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGA 34382 || ||| |||| || || |||| ||||| || || ||||| || || ||||| |||| Sbjct 906 CCGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGA 965 Query 34383 TCTGCATCGC 34392 | ||||| || Sbjct 966 TTTGCATGGC 975 >seq8832 Length=4481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34204 CTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAG 34263 ||| ||||||||||||| ||| || | || |||| || ||||| ||||| ||||| Sbjct 601 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAG 660 Query 34264 CCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTA 34322 || ||||||| || |||| | || |||||| || ||||| ||| | | | | Sbjct 661 TCGTTGCTGGTCCGGCGGG-ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCA 719 Query 34323 TCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGA 34382 || ||| |||| || | ||||| ||||| || || ||||| || || ||||| |||| Sbjct 720 CCGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGA 779 Query 34383 TCTGCATCGC 34392 | ||||| || Sbjct 780 TTTGCATGGC 789 >seq3991 Length=17808 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||| || || |||||||||| || |||| | || ||||| || || || || || Sbjct 17066 TCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAG 17125 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || || ||||| || || | || |||||| || | |||||| ||||| | || Sbjct 17126 ATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTT-GCTTTCACATT 17184 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||||| |||| || |||||||| ||||| | ||||||||| Sbjct 17185 ATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCAC 17244 Query 34378 AAAGATCTGCAT 34389 ||| || ||||| Sbjct 17245 AAAAATTTGCAT 17256 >seq1539 Length=61058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||| |||| || ||| | || ||||| || || ||||| || Sbjct 9537 TCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAG 9478 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| || ||||| || || | || |||||| || | |||||| ||||| | || Sbjct 9477 ATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTT-GCTTTCACATT 9419 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||||| |||| || |||||||| ||||| | ||||||||| Sbjct 9418 ATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCAC 9359 Query 34378 AAAGATCTGCAT 34389 ||| || ||||| Sbjct 9358 AAAAATTTGCAT 9347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322676188844000