Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10184 125 6e-24 seq2067 125 6e-24 seq8832 107 2e-18 seq3991 98.7 8e-16 seq2970 96.9 3e-15 >seq10184 Length=3342 Score = 125 bits (138), Expect = 6e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 45151 CTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAA 45210 |||||||||||||||| ||| ||| |||| ||||||||||| |||||||| || | Sbjct 787 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAG 846 Query 45211 CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC 45270 ||||| ||||| || || | || ||||||||| || || ||| || | |||| Sbjct 847 TCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 906 Query 45271 GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGAT 45330 |||| |||||| |||| ||| |||||||| || ||||| |||||||| ||||| Sbjct 907 CGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGAT 966 Query 45331 TTGCATG 45337 ||||||| Sbjct 967 TTGCATG 973 >seq2067 Length=34267 Score = 125 bits (138), Expect = 6e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 45151 CTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAA 45210 |||||||||||||||| ||| ||| |||| ||||||||||| |||||||| || | Sbjct 29579 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAG 29638 Query 45211 CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC 45270 ||||| ||||| || || | |||||||||||| || || ||| || | |||| Sbjct 29639 TCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 29698 Query 45271 GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGAT 45330 | || |||||| |||| ||| |||||||| || ||||| |||||||| ||||| Sbjct 29699 TGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 29758 Query 45331 TTGCATG 45337 ||||||| Sbjct 29759 TTGCATG 29765 >seq8832 Length=4481 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 45151 CTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAA 45210 |||||||||||||||| ||| ||| | || ||||||||||| |||||||| || | Sbjct 601 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAG 660 Query 45211 CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC 45270 || || ||||| || || | |||||||| ||| || || ||| || | |||| Sbjct 661 TCGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCAC 720 Query 45271 GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGAT 45330 |||| ||||| |||| || |||||||| || ||||| |||||||| ||||| Sbjct 721 CGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 780 Query 45331 TTGCATG 45337 ||||||| Sbjct 781 TTGCATG 787 >seq3991 Length=17808 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || |||||| || |||||||| ||| || ||| | || Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||||||||| || || |||||||| |||||||| || || | ||||||||||||| Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | ||| | || || || |||| ||| || || Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| || ||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2970 Length=24236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCG 45181 || |||||||| || || |||||| || |||||||| ||| || ||| ||| ||| Sbjct 8084 AAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8025 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 ||| ||||||||||| || || |||| || ||||| || | || | ||| |||||| Sbjct 8024 TCG---AGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTG 7968 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || | || ||| |||| | | |||| || ||| ||||||| ||| || Sbjct 7967 TCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATG 7908 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||| ||| |||||||| |||||||| Sbjct 7907 GTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||| || |||||||| ||| || || | || Sbjct 14480 AAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCT 14421 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||||||||| || || ||||| || || || || || || | ||||||||||||| Sbjct 14420 TCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCC 14361 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | || | ||| || || |||| ||| || || Sbjct 14360 TGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTT 14301 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| ||||| || |||||||| Sbjct 14300 TTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCG 45181 || |||||||| || || |||||| || |||||||| ||| || ||| ||| ||| Sbjct 8312 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8253 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 ||| |||||||| || || || |||| || ||||| || | || | ||||||||| Sbjct 8252 TCG---AGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 8196 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || | || ||| || || | | | | || | | ||| ||||||| ||| || Sbjct 8195 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 8136 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||| ||| |||||||| |||||||| Sbjct 8135 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || || || || |||||||||||| || ||| | || ||| Sbjct 14249 ACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCC 14190 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||||||| || || |||| ||| || || || || || | ||||||||||||| Sbjct 14189 AATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 14130 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| ||| || | || | ||| || || |||| ||| || || || Sbjct 14129 ATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTT 14070 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || |||||||| || ||||| Sbjct 14069 CCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394591174236025