Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3766 96.9 3e-15 seq8845 91.5 1e-13 seq54714 87.8 2e-12 seq482 87.8 2e-12 >seq3766 Length=16830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 13857 AAAAATCAACATCTA-ACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||| ||||| | |||||| | | ||||| | | |||||||| ||||| || Sbjct 691 AAAAATCGACATCGAGACGAAATTCCCGC-TGGTCTTCGGTCGAAATAACACCCATCTTC 633 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || |||||| ||||| ||| ||||||||||| ||||| |||| | |||| ||| ||| Sbjct 632 TGGTATTCAGAAACTCGTTTCTCAAAGAAGTTCGTTTTCCCTTGAATCGATAAATTCTCC 573 Query 13976 ATAAAATCAAATGGATT 13992 |||||||| || ||||| Sbjct 572 ATAAAATCGAACGGATT 556 >seq8845 Length=2813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 13857 AAAAATCAACATCTA-ACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||| ||||| | |||||| | | | |||| | | |||||||| ||||| || Sbjct 2602 AAAAATCGACATCGAGACGAAATTCCCGT-TGATCTTCGGTCGAAATAACACCCATCTTC 2544 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || |||||| ||||| ||| ||||||||||| ||||| |||| | || | ||| ||| Sbjct 2543 TGGTATTCAGAAACTCGTTTCTCAAAGAAGTTCGTTTTCCCTTGAATCGACAAATTCTCC 2484 Query 13976 ATAAAATCAAATGGATT 13992 |||||||| || ||||| Sbjct 2483 ATAAAATCGAACGGATT 2467 >seq54714 Length=784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTA-ACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||| ||||| | |||||| | | | ||||| | | |||||||| ||||| || Sbjct 651 AAAAATCGACATCGAGACGAAATTCCCGT-TGGTCTTCGGTCGAAATAACACCCATCTTC 709 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||| ||||| ||| ||||||||||| ||||| |||| | || | ||| ||| Sbjct 710 TGGTATTCGGAAACTCGTTTCTCAAAGAAGTTCGTTTTCCCTTGAATCGACAAATTCTCC 769 Query 13976 ATAAAATCAAATGGA 13990 |||||||| || ||| Sbjct 770 ATAAAATCGAACGGA 784 >seq482 Length=68918 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTA-ACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||| ||||| | |||||| | | ||||| | | |||||||| ||||| || Sbjct 68227 AAAAATCGACATCGAGACGAAATTCCCGC-TGGTCTTCGGTCGAAATAACACCCATCTTC 68285 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || || ||| |||| ||| ||||||||||| ||||| |||| | ||| | ||| ||| Sbjct 68286 TGGTACTCAGAGACTCGTTTCTCAAAGAAGTTCGTTTTCCCTTGAATTGACAAATTCTCC 68345 Query 13976 ATAAAATCAAATGGATT 13992 |||||||| || ||||| Sbjct 68346 ATAAAATCGAACGGATT 68362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481739502607000