Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3991 129 4e-25 seq2970 129 4e-25 seq1539 129 4e-25 >seq3991 Length=17808 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| ||||| || | |||||||| || ||||||||||| Sbjct 17029 TCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGC 17088 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||||||||| |||||| |||| || | ||| ||||| || Sbjct 17089 CAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGG 17148 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| |||||||| | || | |||| || || | ||| || |||| | |||| Sbjct 17149 AATGCCCTCCTTATCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 17207 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| |||||||| ||||| ||||||||||||||| Sbjct 17208 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| ||||| || | |||||||| || ||||||||||| Sbjct 17257 TCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGC 17316 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||| | |||||| |||||| |||| || | ||||||||| || Sbjct 17317 CAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGG 17376 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| |||||||| | || | |||| || || | ||| || |||| | |||| Sbjct 17377 TATGCCCTCCTTATCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 17435 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| |||||||| ||||| ||||||||||||||| Sbjct 17436 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || ||||| || ||||| |||||||| |||||| Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||||||| || ||| | || || | ||| || ||| || Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || |||| ||| || | | ||||| ||| || | Sbjct 11954 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACAT 12013 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| || |||| || |||| |||||||| |||||||||||| Sbjct 12014 TCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 >seq2970 Length=24236 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| |||||| |||| || ||||| |||||||| ||||| Sbjct 8328 TCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGC 8269 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||| | |||||| |||||| |||| || | ||||||||| || Sbjct 8268 CAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGG 8209 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| ||||| || | || | |||||| || | ||| || |||| | |||| Sbjct 8208 TATGCCCTCCTTGTCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 8150 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| |||||||| ||||| ||||||||||||||| Sbjct 8149 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| ||||| |||| |||||||| |||||||| ||||| Sbjct 7872 TCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGC 7813 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | |||||| |||||| |||| || | ||||||||| || Sbjct 7812 TAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGG 7753 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| ||||| || | || | |||||| || | ||| || |||| | |||| Sbjct 7752 TATGCCCTCCTTGTCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 7694 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| |||||||| ||||| ||||||||||||||| Sbjct 7693 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 Score = 118 bits (130), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | || |||| ||| || |||||||||||||| |||||||||||||| Sbjct 14268 TCCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGC 14209 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||||||||| || ||| | || || | ||| |||||| || Sbjct 14208 CAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGG 14149 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | || ||||| || |||| | ||| || | | ||||| | ||| | || Sbjct 14148 GATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTAT--CCGAACTTTCA 14091 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||| ||| |||| ||||||| ||||| |||||||| |||||| Sbjct 14090 CATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| ||| || |||| || ||||| |||||||| ||||| Sbjct 8100 TCCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGC 8041 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||| | |||||| |||||| |||| || | ||||||||| || Sbjct 8040 CAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGG 7981 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | |||||||| || | || | |||||| | | ||| |||||| |||| Sbjct 7980 AATACCTTCCTTGTCAGTGATCT-TTGCTTTAATATTATCAATTGTGTCAGTACTCTCGA 7922 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| |||||||| ||||| ||||||||||||||| Sbjct 7921 CCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCATT 7872 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || ||||| || ||||| |||||||| ||||||| || | ||||||| Sbjct 14477 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCC 14418 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | | ||| |||||| || | || ||||| || Sbjct 14417 AATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 14358 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGGTTTCAATGGTGATGCTTT 18294 |||| | ||| || | | ||||| | ||| | || ||| | ||| ||| ||| Sbjct 14357 ATTTTTGCCTTCACATTGTCTACAGTAT--CCGAACTTTCACATTCCAGGGTTATGGTTT 14300 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||||||| ||||| || |||||||||||| Sbjct 14299 TTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 >seq1539 Length=61058 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| |||||| |||| || ||||| |||||||| ||||| Sbjct 9574 TCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGC 9515 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||||||||| || ||| |||| || | ||| ||||| || Sbjct 9514 CAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGG 9455 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| |||||||| | || | |||||| || | ||| || |||| | |||| Sbjct 9454 AATGCCCTCCTTATCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9396 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| |||||||| ||||| ||||||||||||||| Sbjct 9395 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| |||||| |||| || ||||| |||||||| ||||| Sbjct 9346 TCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGC 9287 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||| | |||||| |||||| |||| || | ||| ||||| || Sbjct 9286 CAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGG 9227 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| |||||||| | || | |||||| || | ||| || |||| | |||| Sbjct 9226 AATGCCCTCCTTATCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9168 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| ||||||| ||||| || |||||||||||| Sbjct 9167 CCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | | |||| ||||| || | |||||||| || ||||||||||| Sbjct 9802 TCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGC 9743 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||| | |||||| |||||| |||| || | ||| ||||| || Sbjct 9742 CAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGG 9683 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| |||||||| | || | |||||| || | ||| || |||| | |||| Sbjct 9682 AATGCCCTCCTTATCAGTGATCT-TTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9624 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| ||||||| ||||| || |||||||||||| Sbjct 9623 CCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378879247291125