Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3991 113 4e-20 seq1539 104 2e-17 seq2970 87.8 1e-12 >seq3991 Length=17808 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| || ||||| ||||| |||||| | || ||||| || Sbjct 17484 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 17425 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | ||| || | ||| || ||| || || ||| ||||| ||| || Sbjct 17424 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATCAA 17365 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| | || | |||||| |||||||| |||||| | ||| || ||| |||| Sbjct 17364 CAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACAAT 17305 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || || ||||||||||| |||||||| || || || Sbjct 17304 ATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17270 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| || ||||| ||||| |||||| | || ||||| || Sbjct 17256 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 17197 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | ||| || | ||| || ||| || || ||| | || ||| ||| Sbjct 17196 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCAG 17137 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| | || | |||||| |||||| |||||||| | ||| || ||| |||| Sbjct 17136 CAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGACTACAAT 17077 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || || ||||||||||| |||||||| || || || Sbjct 17076 ATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17042 >seq1539 Length=61058 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || |||||| | ||||| ||||| ||||| | || ||||| || Sbjct 9575 ATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACTCTGGAGGTCGAGAGCAGT 9634 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | ||| || | ||| || ||| || || ||| | || ||| ||| Sbjct 9635 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCAG 9694 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| | || | |||||| |||||||| |||||| | ||| || ||| |||| Sbjct 9695 CAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGACTACAAT 9754 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || || ||||||||||| |||||||| ||||| || Sbjct 9755 ATCCAAAAAGAGGCCACCCTTCATTTGGTGTTGCG 9789 >seq2970 Length=24236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGA-TGTCGAA--TCG 24888 ||||| || || || ||||| | ||||| ||||| |||||| | || ||| || ||| Sbjct 14269 ATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14328 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTA--CCGGTTG 24946 || | |||||| | ||| |||| |||||| | | | ||| ||| ||| || | Sbjct 14329 ---GATACTGTAGACAATGTGAAGGCAAAAATC-CAGGACAAGGAGG-GTATCCCACCGG 14383 Query 24947 ACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATT 25006 | ||||||||||| || | ||| || |||||| |||||||| | ||| || ||||| Sbjct 14384 ATCAGCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATT 14443 Query 25007 ACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||| || || ||| | || || || || || || || | | |||||| Sbjct 14444 ACAACATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGGT 14496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417791515508000