Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2518 122 8e-23 seq615 118 9e-22 seq3991 116 3e-21 seq5492 114 1e-20 seq51152 105 6e-18 seq8845 105 6e-18 seq3766 105 6e-18 seq482 105 6e-18 seq12421 104 2e-17 seq10184 104 2e-17 seq2067 95.1 1e-14 seq2970 89.7 5e-13 >seq2518 Length=16751 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGA 22503 || ||| |||||| | ||| || |||||||||| ||||| | ||| |||||||| Sbjct 9545 CAAATGCGGGTTCAGGATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTGGA 9604 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 |||| | || ||||| || || ||||| || || || || || || || ||||| ||||| Sbjct 9605 TGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTTGACGCGGTTGGCAT 9664 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 |||||| | ||| || ||| | || |||||||| | ||| ||| ||| || Sbjct 9665 CGGCGCGACCAGCAGACTGTTGCGCACTCCGTGCTTGGCAATCCGCTCCTTCAGCGCCGC 9724 Query 22624 CCAGTCCCACAGATCGGACGGCGTCAC 22650 ||||||||||||||||| ||| || || Sbjct 9725 CCAGTCCCACAGATCGGTCGGAGTGAC 9751 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| | || ||||| || || ||| ||||| || || || | ||| |||||| Sbjct 10602 GTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTT 10661 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 || || ||||||| |||||||| | ||||||||| ||||| || ||| |||||| Sbjct 10662 CGACTTGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTCGGTCTGCGA 10721 Query 23185 CTCGATGATCGCTCGCCACA 23204 ||||||||||| ||||| Sbjct 10722 GGTGATGATCGCTCTCCACA 10741 >seq615 Length=100005 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGA 22503 || ||| |||| | | ||| || |||||||| | ||||| | |||||| || || Sbjct 5570 CAAATGCGGGTTTAGGATTTGGAAGTCGCCGGATAGCACGCGCCTGCTGTAAATATTTGA 5629 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 |||| | || ||||| || || ||||| || || || || || || || ||||||||||| Sbjct 5630 TGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCAT 5689 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 |||||||| ||| || ||| | || |||||||| | ||| ||| ||| || Sbjct 5690 CGGCGCCACCAGCAGACTGTTGCGCACCCCGTGCTTGGCAATCCGCTCCTTCAGCGCCGC 5749 Query 22624 CCAGTCCCACAGATCGGACGGCGTCACA 22651 ||||||||||||||||| ||| || ||| Sbjct 5750 CCAGTCCCACAGATCGGTCGGAGTGACA 5777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| | || || || || || ||| ||||| || || || | || |||||| Sbjct 7946 GTACTCAATGATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTT 8005 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 || || ||||||| |||||||| | ||||||||| ||||| || ||| |||||| Sbjct 8006 CGACTTGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCAGTTTCGGTCTGCGA 8065 Query 23185 CTCGATGATCGCTCGCCACA 23204 ||||||||||||||||| Sbjct 8066 GGTGATGATCGCTCGCCACA 8085 >seq3991 Length=17808 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| |||||||| || ||||| || ||| | || |||| || Sbjct 12060 ATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTCT 12001 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | ||| || | || || || ||| ||||||||| || | ||||| |||||| Sbjct 12000 GATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 11941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || ||||| |||||||| ||| || |||||| ||| Sbjct 11940 CAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAAC 11881 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAA 31424 || ||||| || || || || || |||| || | || ||||| ||| ||| Sbjct 11880 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTGCGCCTCAGGGGAGGTGGAA 11829 >seq5492 Length=8422 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGA 22503 || ||| |||| | | ||| || |||||||||| ||||| | ||| ||||| || Sbjct 6752 CAAATGCGGGTTTAGAATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTTGA 6693 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 |||| | || ||||| || || ||||| || || || || || || || ||||||||||| Sbjct 6692 TGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCAT 6633 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 |||||| | ||| || ||| | || |||||||| ||||| ||| ||| | Sbjct 6632 CGGCGCGACCAGCAGACTGTTGCGCACTCCGTGCTTGGAAATCCGCTCCTTCAGCGCTGC 6573 Query 22624 CCAGTCCCACAGATCGGACGGCGTCACA 22651 ||| ||||||||||||| ||| || ||| Sbjct 6572 CCAATCCCACAGATCGGTCGGAGTGACA 6545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| | || || ||||| || ||| ||||| || || || | || |||||| Sbjct 5720 GTACTCGATGATCTCAGTACACAGGTTGGAGCACTTGATGGTCCCGAGGTTTTGCTGGTT 5661 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 || || ||||||| |||||||| | ||||||||| ||||| || ||| |||||| Sbjct 5660 CGACTTGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTCGGTCTGCGA 5601 Query 23185 CTCGATGATCGCTCGCCACA 23204 ||||||||||||||||| Sbjct 5600 GGTGATGATCGCTCGCCACA 5581 >seq51152 Length=820 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 ||| || |||| || || | |||| ||||| || |||||||| || ||||| ||||| Sbjct 174 GGCTACATTCGGAGAAAGATTGGTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGG 115 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 ||| ||||| ||||| || ||| ||||||||||||| || ||||| || || || || Sbjct 114 CAGTTTTGCAGCAATTTTCTGGTTGAAGAAACGCGGTCTAATGCCGGGTCTCACACACAG 55 Query 58076 CAACGAGTTGATATCGCGCGACGAGG 58101 ||| || | || |||||||| |||| Sbjct 54 CAATGAACTAATCTCGCGCGATGAGG 29 >seq8845 Length=2813 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 ||| || |||| || || | |||| ||||| || |||||||| || ||||| ||||| Sbjct 1908 GGCTACATTCGGAGAAAGATTGGTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGG 1967 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 ||| ||||| ||||| || ||| ||||||||||||| || ||||| || || || || Sbjct 1968 CAGTTTTGCAGCAATTTTCTGGCTGAAGAAACGCGGTCTAATGCCTGGTCTCACACACAG 2027 Query 58076 CAACGAGTTGATATCGCGCGACGAGG 58101 ||| || | || |||||||| |||| Sbjct 2028 CAATGAACTAATCTCGCGCGATGAGG 2053 >seq3766 Length=16830 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 ||| || |||| || || | |||| ||||| || |||||||| || ||||| ||||| Sbjct 1 GGCTACATTCGGAGAAAGATTGGTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGG 60 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 ||| ||||| ||||| || ||| ||||||||||||| || ||||| || || || || Sbjct 61 CAGTTTTGCAGCAATTTTCTGGTTGAAGAAACGCGGTCTAATGCCGGGTCTCACACACAG 120 Query 58076 CAACGAGTTGATATCGCGCGACGAGG 58101 ||| || | || |||||||| |||| Sbjct 121 CAATGAACTAATCTCGCGCGATGAGG 146 >seq482 Length=68918 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 ||| || |||| || || | |||| ||||| || |||||||| || ||||| ||||| Sbjct 68918 GGCTACATTCGGAGAAAGATTGGTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGG 68859 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 ||| ||||| ||||| || ||| ||||||||||||| || ||||| || || || || Sbjct 68858 CAGTTTTGCAGCAATTTTCTGGTTGAAGAAACGCGGTCTAATGCCGGGTCTCACACACAG 68799 Query 58076 CAACGAGTTGATATCGCGCGACGAGG 58101 ||| || | || |||||||| |||| Sbjct 68798 CAATGAACTAATCTCGCGCGATGAGG 68773 >seq12421 Length=2797 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGA 22503 || ||| |||| | | ||| || ||||| |||| ||||| | ||| |||||||| Sbjct 114 CAAATGCGGGTTTAGGATTTGGAAGTCGCCAGACAGCACGCGTCTGCTGTAGATGTTGGA 173 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 |||| | || || || || || ||||| || || || || || || || ||||||||||| Sbjct 174 TGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCAT 233 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 |||||| | ||| || ||| | || |||||||| | ||| ||| | | || Sbjct 234 CGGCGCAACCAGCAGACTGTTGCGCACCCCGTGCTTGGCAATCCGCTCCTTCATCGCCGC 293 Query 22624 CCAGTCCCACAGATCGG 22640 ||||||||||||||||| Sbjct 294 CCAGTCCCACAGATCGG 310 >seq10184 Length=3342 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| || || ||||||||| | || || || || Sbjct 973 CATGCAAATCTTCGTGAAGACACTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAA 914 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| || || | || || | || ||||||||||||| | ||||| ||||| Sbjct 913 CGACACGGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCA 854 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || ||||| |||||||| |||| ||| Sbjct 853 GCAGCGACTTATCTTCGCCGGCAAACAACTGGAGGAC 817 >seq2067 Length=34267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| || || ||||||||| | || || || || Sbjct 29765 CATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAA 29706 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || || | || || | || ||||||||| ||| | ||||| ||||| Sbjct 29705 CGATACAGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 29646 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || ||||| |||||||| |||| ||| Sbjct 29645 GCAGCGACTCATCTTCGCCGGCAAACAACTGGAGGAC 29609 >seq2970 Length=24236 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || |||||||| || ||||| || ||| | || |||| || Sbjct 14269 ATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14328 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | ||| || | || || | ||| ||||||||| || | || || || ||| Sbjct 14329 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14388 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || || ||||| |||||||| ||| || |||||| ||| Sbjct 14389 CAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAAC 14448 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAA 31424 || ||||| || || || || || |||| | | || || || ||| ||| Sbjct 14449 ATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGGTGGAA 14500 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || || ||||| || ||||| || ||| | || |||| || Sbjct 14041 ATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14100 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | ||| || | || || | ||| ||||||||| || | || || || ||| Sbjct 14101 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14160 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || ||||| |||||||| ||| || ||| || ||| Sbjct 14161 CAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAAC 14220 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| || || || |||| || | || ||||| || Sbjct 14221 ATCCAAAAAGAATCAACCCTCCACTTGGTTCTGCGCCTCAGGGGAGG 14267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445206266658000