Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1539 122 9e-23 seq3991 104 2e-17 seq2970 91.5 1e-13 seq27157 84.2 2e-11 >seq1539 Length=61058 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| ||||||| || | ||| ||||| ||||| |||||| || |||| Sbjct 9333 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9274 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||| ||||| || ||| |||| || ||||||||||| | || ||||| || || Sbjct 9273 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9214 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||| ||| | | || | || || || ||| ||||| | ||| | Sbjct 9213 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATG 9154 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||||| ||||| ||||| |||||||| Sbjct 9153 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| ||||||| || | ||| ||||| ||||| |||||| || |||| Sbjct 9561 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9502 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| || ||| |||| || ||||||||||| | || ||||| || || Sbjct 9501 TCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9442 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||| ||| | | || | || || || ||| ||||| | ||| | Sbjct 9441 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 9382 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || |||||||| ||||| || || |||||||| Sbjct 9381 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || || |||| || | ||||||||| || || || ||| || |||| Sbjct 9789 CGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 9730 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||| ||||| || ||| |||| || ||||||||||| | || ||||| || || Sbjct 9729 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9670 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||| ||| | | || | || || || ||| ||||| | || | Sbjct 9669 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATG 9610 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||||| ||||| ||||| |||||||| Sbjct 9609 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq3991 Length=17808 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| || |||| || | ||||||||| || || || ||| || || | Sbjct 17042 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCA 17101 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| || ||| ||||||| ||||||||||| | || ||||| || || Sbjct 17102 TCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 17161 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||| ||| | | || | || || || ||| ||||| | ||| | Sbjct 17162 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17221 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || |||||||| ||||| || || |||||||| Sbjct 17222 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 >seq2970 Length=24236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| ||||| | || ||||| ||||| ||||| |||||| || || | Sbjct 14483 CGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCA 14424 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| || ||| |||||| |||||||||||| || || || || || ||| Sbjct 14423 TCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTG 14364 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||||| || | | || || || || | || || | ||| | Sbjct 14363 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14304 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||||| ||||| ||||| |||||||| Sbjct 14303 GTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 >seq27157 Length=1261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 139636 CAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTT 139694 ||||||||||||||| ||||| |||||||| ||||| ||| | || | || | | || Sbjct 880 CAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTTT 822 Query 139695 CCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 | | |||||| ||| ||| || || | ||| | ||||||||||| | || || || | Sbjct 821 CAATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAA 762 Query 139755 ATATTTGCATAGC 139767 | ||||||||||| Sbjct 761 AGATTTGCATAGC 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495440664580000