Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3766 95.1 1e-14 seq8845 89.7 5e-13 seq482 86.0 6e-12 seq54714 84.2 2e-11 >seq3766 Length=16830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 13344 GTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTT 13403 ||||| | | |||||||| ||||| || || |||||| ||||| ||| ||||| ||||| Sbjct 660 GTCTTCGGTCGAAATAACACCCATCTTCTGGTATTCAGAAACTCGTTTCTCAAAGAAGTT 601 Query 13404 AGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||| |||| | |||| ||| |||||||||||||| ||||| Sbjct 600 CGTTTTCCCTTGAATCGATAAATTCTCCATAAAATCGAACGGATT 556 >seq8845 Length=2813 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 13345 TCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTA 13404 |||| | | |||||||| ||||| || || |||||| ||||| ||| ||||| ||||| Sbjct 2570 TCTTCGGTCGAAATAACACCCATCTTCTGGTATTCAGAAACTCGTTTCTCAAAGAAGTTC 2511 Query 13405 GTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||| |||| | || | ||| |||||||||||||| ||||| Sbjct 2510 GTTTTCCCTTGAATCGACAAATTCTCCATAAAATCGAACGGATT 2467 >seq482 Length=68918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 13344 GTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTT 13403 ||||| | | |||||||| ||||| || || || ||| |||| ||| ||||| ||||| Sbjct 68258 GTCTTCGGTCGAAATAACACCCATCTTCTGGTACTCAGAGACTCGTTTCTCAAAGAAGTT 68317 Query 13404 AGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||| |||| | ||| | ||| |||||||||||||| ||||| Sbjct 68318 CGTTTTCCCTTGAATTGACAAATTCTCCATAAAATCGAACGGATT 68362 >seq54714 Length=784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 13313 aaaaaTCAACATCTA-ATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||| ||||| | | |||| | | | ||||| | | |||||||| ||||| || Sbjct 651 AAAAATCGACATCGAGACGAAATTCCCGT-TGGTCTTCGGTCGAAATAACACCCATCTTC 709 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 || ||||| ||||| ||| ||||| ||||| ||||| |||| | || | ||| ||| Sbjct 710 TGGTATTCGGAAACTCGTTTCTCAAAGAAGTTCGTTTTCCCTTGAATCGACAAATTCTCC 769 Query 13432 ATAAAATCGAATGGA 13446 ||||||||||| ||| Sbjct 770 ATAAAATCGAACGGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477987423261000