Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2970 127 2e-24 seq3991 123 2e-23 seq1539 109 4e-19 >seq2970 Length=24236 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| |||| || ||||||||| | |||||||||| ||| || || | || Sbjct 8084 AAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8025 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || ||||| |||| || |||||||| | ||| | |||||| || || Sbjct 8024 TCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCA 7965 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||||| |||| | | ||| |||||| | |||||| || | ||||| ||| Sbjct 7964 GTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTT 7905 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || ||||| | |||||||||||||||||||||| Sbjct 7904 TTCCCGGTCAAAGTTTTCACAAAAATTTGCATT 7872 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||||| ||| || || | || || | |||||| || ||||| Sbjct 8292 CTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAA 8233 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||| || |||||||| | ||| | || || || || ||||| |||| || | Sbjct 8232 GATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATT 8173 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || | |||||| || | ||||| ||||||||||| | ||||||||| Sbjct 8172 ATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCAC 8113 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 8112 AAAAATTTGCATT 8100 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || |||||||| | || ||| ||||| | |||||||||| || || || | || Sbjct 7856 AAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCT 7797 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || ||||| |||| || |||||||| | ||| | || || || || Sbjct 7796 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 7737 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||||| |||| || | ||| || || | |||||| || | ||||| ||| Sbjct 7736 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 7677 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||||||| | |||||||||||||||||||||| Sbjct 7676 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 >seq3991 Length=17808 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || |||||||| | ||| ||| ||||| | |||||| |||| ||| ||||| | || Sbjct 17045 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCT 17104 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 ||||||||||| || ||||| |||| || || ||||| | || | || || || || Sbjct 17105 TCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 17164 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||||| |||| || | ||| || || | |||||| || | ||||| ||| Sbjct 17165 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 17224 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||||||| | |||||||||||||||||||||| Sbjct 17225 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || |||||||| | ||| ||| ||||| | |||||| |||| ||| || || | || Sbjct 17273 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 17332 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || ||||| |||| || |||||||| | ||| | || || || || Sbjct 17333 TCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCA 17392 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||||| |||| || | ||| || || | |||||| || | ||||| ||| Sbjct 17393 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 17452 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||||||| | |||||||||||||||||||||| Sbjct 17453 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||||| || ||||||||| | |||||||||| ||| ||||| | || Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || ||||||||||| || ||||| || | || | ||| || || || Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| | | || || || | || || || | ||| || | ||||| ||| Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| ||||| |||||||||||||| |||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| || ||||||||| | |||||||||| ||| || || | || ||| Sbjct 11852 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCC 11911 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || |||||||||| || || || || | ||| | ||| || || || | Sbjct 11912 AATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGG 11971 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | | || || || | || || || | || |||| |||||||||||| Sbjct 11972 ATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATAGTTTTT 12031 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || |||||||| || |||||||||||| Sbjct 12032 CCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 >seq1539 Length=61058 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||||| ||| || || | || ||||||||||| || ||||| Sbjct 9538 CTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAA 9479 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | || || ||||| | || | || || || || ||||| |||| || | Sbjct 9478 GATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATT 9419 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || | |||||| || | ||||| ||||||||||| | ||||||||| Sbjct 9418 ATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCAC 9359 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 9358 AAAAATTTGCATT 9346 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||| | ||| ||| ||||| | |||||| |||| ||| || || | || Sbjct 9786 AACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 9727 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || ||||| || | || || ||||| | || | || || || || Sbjct 9726 TCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9667 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||||| |||| || | ||| || || | |||||| || | ||||| ||| Sbjct 9666 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGTT 9607 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||||||| || |||||||| |||||||||||| Sbjct 9606 TTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||||| ||| || || | || || | |||||| || ||||| Sbjct 9310 CTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAA 9251 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | || || ||||| | || | || || || || ||||| |||| || | Sbjct 9250 GATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATT 9191 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || | |||||| || | ||||| ||||||||||| || |||||||| Sbjct 9190 ATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCAC 9131 Query 43098 AAAAATTTGCATT 43110 |||||||||||| Sbjct 9130 GAAAATTTGCATT 9118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380902365630450