Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2970 118 1e-21 seq1539 104 2e-17 seq3991 95.1 1e-14 seq10184 87.8 2e-12 >seq2970 Length=24236 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| ||||||| || | |||||||| |||||||||||| | |||| Sbjct 7859 CGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCA 7800 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||||||||| || ||| ||||||| ||||| ||||| | |||||||| || ||| Sbjct 7799 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 7740 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | || || || || || || | || | Sbjct 7739 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 7680 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| ||||| || || |||||||| Sbjct 7679 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| || |||| || | || ||||| |||||||||||| || || | Sbjct 8315 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8256 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||||||||| || ||| ||||||| ||||| ||||| | |||||||| || ||| Sbjct 8255 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 8196 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | || || || || || || | || | Sbjct 8195 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 8136 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| ||||| || || |||||||| Sbjct 8135 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| || || | || | || ||||| |||||||||||| || || | Sbjct 8087 CGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8028 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||||||||| || ||| ||||||| ||||| ||||| | || || ||||| ||| Sbjct 8027 TCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTG 7968 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | ||||| || || || || | || | Sbjct 7967 TCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATG 7908 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| ||||| || || |||||||| Sbjct 7907 GTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | |||||||| || || | || || || ||||| |||||||||||| | Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||| || ||| |||||| |||||||||||| || || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| || | | || || || |||| ||| | Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACAT 14316 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || ||||||| ||||| ||||| |||||||| Sbjct 14315 TCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||| || || | || ||||||||||| |||||||| ||| || |||| Sbjct 14255 CGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCA 14196 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| || ||| | ||||| ||||||||||| || || || || || ||| Sbjct 14195 TCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTG 14136 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||||| || | | || || || |||| ||| ||| | || | Sbjct 14135 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14076 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||||| ||||| || || || ||||| Sbjct 14075 GTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq1539 Length=61058 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| || |||| || | || ||||| |||||||||||| || |||| Sbjct 9333 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9274 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||||||||| || ||| |||| || ||||||||||| | || ||||| || || Sbjct 9273 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9214 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | || || || || || || | || | Sbjct 9213 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATG 9154 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||||| ||||| ||||| |||||||| Sbjct 9153 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || ||||||| || | |||||||| || ||||| ||| || |||| Sbjct 9789 CGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 9730 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||||||||| || ||| |||| || ||||||||||| | || ||||| || || Sbjct 9729 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9670 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | || || || || || || | ||| | Sbjct 9669 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATG 9610 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||||| ||||| ||||| |||||||| Sbjct 9609 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| || |||| || | || ||||| |||||||||||| || |||| Sbjct 9561 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9502 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| || ||| |||| || ||||||||||| | || ||||| || || Sbjct 9501 TCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9442 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | || || || || || || | || | Sbjct 9441 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 9382 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| ||||| || || |||||||| Sbjct 9381 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq3991 Length=17808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| ||||||| || | |||||||| || ||||| ||| || || | Sbjct 17042 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCA 17101 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| || ||| ||||||| ||||||||||| | || ||||| || || Sbjct 17102 TCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 17161 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| ||| | | || | || || || || || || | || | Sbjct 17162 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17221 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| ||||| || || |||||||| Sbjct 17222 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 >seq10184 Length=3342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 143000 TGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGA 143059 || |||||||| ||| || |||| ||| || |||||||| || || |||| || Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 143060 CGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACC 143119 || ||||| || || || |||||||| ||||| || || || | | |||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 143120 GTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATT 143179 ||||| | | || || || | || | |||||| ||||||| ||| || ||||| ||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 143180 TGCATAGC 143187 ||||| || Sbjct 968 TGCATGGC 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506377304718000