Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2970 143 2e-29 seq3991 138 8e-28 seq1539 129 4e-25 seq2297 89.7 4e-13 seq27157 84.2 2e-11 seq2125 82.4 6e-11 >seq2970 Length=24236 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||||||||| | |||||||| |||||||||||| || | | | | ||| Sbjct 7856 AAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCT 7797 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | |||| |||||||| || | || || || || |||||| Sbjct 7796 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 7737 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || ||||| ||||| Sbjct 7736 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 7678 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| |||||||||||||| Sbjct 7677 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| | || ||||| |||||||||||| | | ||| | ||| Sbjct 8312 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8253 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | |||| |||||||| || | || || || || |||||| Sbjct 8252 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 8193 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || ||||| ||||| Sbjct 8192 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 8134 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| |||||||||||||| Sbjct 8133 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || || ||||| | || ||||| |||||||||||| | | ||| | ||| Sbjct 8084 AAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8025 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | |||| |||||||| || | ||||| ||||| |||||| Sbjct 8024 TCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCA 7965 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || | | | || || || || || | || || || | ||| ||||| Sbjct 7964 GTGATCTTTGCT-TTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGT 7906 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| |||||||||||||| Sbjct 7905 TTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || || ||||| || || ||||| |||||||||||| | | | | | ||| Sbjct 14480 AAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCT 14421 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | ||||||||||| || || ||| || || || ||||| Sbjct 14420 TCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCC 14361 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACAT-CTAAGGTAATGGT 15330 ||||| ||| ||| | |||| ||||| | |||| |||| | | ||| ||||| Sbjct 14360 TGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTC-ACATTCCAGGGTTATGGT 14302 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||||||||| || ||||||||||| Sbjct 14301 TTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 >seq3991 Length=17808 Score = 138 bits (152), Expect = 8e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||||||||||| |||||||| || ||||| ||| | | | | | ||| Sbjct 17045 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCT 17104 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | |||| ||||| || || ||||||| || || || ||| Sbjct 17105 TCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 17164 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || ||||| ||||| Sbjct 17165 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 17223 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| |||||||||||||| Sbjct 17224 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||||||||||| |||||||| || ||||| ||| | | | | | ||| Sbjct 17273 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 17332 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| |||||| || || | |||| |||||||| || | || || || || || ||| Sbjct 17333 TCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCA 17392 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || ||||| ||||| Sbjct 17393 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 17451 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| |||||||||||||| Sbjct 17452 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || ||||| |||||||||||| | | ||| | ||||| Sbjct 11851 AACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTC 11910 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || || | |||| ||||| ||||| || || || || ||||| Sbjct 11911 CAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTG 11970 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA-TCTAAGGTAATGGTTT 15332 ||||| ||| ||| | |||| ||||| | |||| ||| |||| ||| || |||| Sbjct 11971 GATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTC-ACATTCTAGGGTTATAGTTT 12029 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || |||||||||||||| ||||||||||| Sbjct 12030 TTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| ||||| || || ||||| |||||||||||| | | | | | || Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | ||||| ||||||||||| ||| || || || ||||| Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| | |||| |||||| | |||| || ||||| |||||| Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| |||||||| ||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq1539 Length=61058 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| | || ||||| |||||||||||| | | | | | ||| Sbjct 9558 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9499 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | || | ||||| || || ||||||| || || || ||| Sbjct 9498 TCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9439 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || ||||| ||||| Sbjct 9438 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 9380 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| |||||||||||||| Sbjct 9379 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| | || ||||| |||||||||||| | | | | | ||| Sbjct 9330 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9271 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | || | ||||| || || ||||||| || || || ||| Sbjct 9270 TCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9211 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || | ||| ||||| Sbjct 9210 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGT 9152 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| ||||| || ||||||||||| Sbjct 9151 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||||| |||||||| || ||||| ||| | | | | | ||| Sbjct 9786 AACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 9727 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | || | ||||| || || ||||||| || || || ||| Sbjct 9726 TCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9667 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || |||||| || ||| | || |||||||| || | || || || | || ||||| Sbjct 9666 GTGATCTTTGCT-TTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGT 9608 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| ||||| || ||||||||||| Sbjct 9607 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq2297 Length=32998 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 ||| ||||||||| || || ||||| ||||| ||||| ||| ||| ||| ||| Sbjct 3047 ATACCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACAT 2988 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 |||| || || ||||| || || || ||||||||||| || || || ||||| || | Sbjct 2987 TTTCAATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGA 2928 Query 15351 CAAAAATTTGCATA 15364 |||| ||||||||| Sbjct 2927 CAAAGATTTGCATA 2914 >seq27157 Length=1261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 ||| || |||||| || || ||||| ||||| ||||| ||| ||| ||| ||| Sbjct 884 ATACCAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACAT 825 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 |||| || || ||||| || || || ||||||||||| || || || ||||| || | Sbjct 824 TTTCAATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGA 765 Query 15351 CAAAAATTTGCATA 15364 |||| ||||||||| Sbjct 764 CAAAGATTTGCATA 751 >seq2125 Length=29214 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 15157 TAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAA 15216 ||| ||||| || ||||| ||| ||||||||||| ||| || || | || || | Sbjct 16022 TAACTGAAGCGTTGAATCCCGTTGGATGTTGTAATCCGCCAGATTTTTCACATCCTCCAG 15963 Query 15217 TTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT 15276 |||||||||| | ||||||||| ||| || || || | ||||| ||||| || ||| Sbjct 15962 TTGTTTGCCATCAAATATCAAACTTTGCTGATCTCTTTGGATTCCCTCTTTTTCCTGAAT 15903 Query 15277 -TTTGCTCTTTACAATTTCT-ATGGTATCGCTATTTTC 15312 ||||| ||| || ||| || |||||||| | ||||| Sbjct 15902 CTTTGC-CTTCAC-ATTGCTGATGGTATCCGTGTTTTC 15867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361735476719025