Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3991 95.1 1e-14 seq2970 91.5 1e-13 seq1539 82.4 6e-11 >seq3991 Length=17808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||||||||| || |||||||| |||| ||| | | || ||| Sbjct 11852 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCC 11911 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||||| || ||| |||| || | ||||| ||| || | ||||| ||||| Sbjct 11912 AATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGG 11971 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| || || | | | |||||||| | || ||| | ||| || ||||| Sbjct 11972 ATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATAGTTTTT 12031 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | |||||| || |||||||||||| Sbjct 12032 CCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| || | || ||||||||||| || |||||||| |||| || | ||| Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || ||||| || ||| |||| | | || || ||| || | ||||| ||||| Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| || || | | | || ||||| | || ||| | ||| |||||| Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || |||| ||||| |||||||| |||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 >seq2970 Length=24236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || | ||||||||| || |||||||| |||| ||| | | || Sbjct 8312 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8253 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || ||||| |||||| | || || | || ||||| || | |||||| ||||| Sbjct 8252 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 8193 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 | || || ||| || | | | ||||| | ||| || | ||| |||||| Sbjct 8192 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 8133 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||| ||||||||||||||| Sbjct 8132 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || ||||||||||| || |||||||| |||| || | | || Sbjct 14480 AAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCT 14421 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||||| || ||| | || | | ||||||||| || | ||||| ||||| Sbjct 14420 TCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCC 14361 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| || || | | | |||||||| | || ||| | ||| |||||| Sbjct 14360 TGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTT 14301 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || | |||||| || |||||||||||| Sbjct 14300 TTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 >seq1539 Length=61058 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || | ||||||||| || |||||||| |||| || | | || Sbjct 9558 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9499 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||||| || ||| | || || | |||||||| || | |||||| || || Sbjct 9498 TCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9439 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 | || || ||| || | | | ||||| | ||| || | ||| |||||| Sbjct 9438 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 9379 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||| ||||||||||||||| Sbjct 9378 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414064886781850