Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1539 113 3e-20 seq3991 95.1 8e-15 seq2970 86.0 4e-12 >seq1539 Length=61058 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||| | || | ||||||||| |||||||| || | |||| || | Sbjct 9789 CGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 9730 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| ||||| ||| || | |||||||| || || || ||||| || || Sbjct 9729 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9670 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || | ||| ||| || | | ||| || || || | || ||||||||||| Sbjct 9669 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATG 9610 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || ||||| |||||||||||||| Sbjct 9609 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || | ||| ||||| || |||||||| | |||| || | Sbjct 9333 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9274 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| ||||| ||| || | |||||||| || || || ||||| || || Sbjct 9273 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9214 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || | ||| ||| || | | ||| || || || | || ||||| ||||| Sbjct 9213 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATG 9154 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || ||||| |||||||||||||| Sbjct 9153 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || | ||| ||||| || |||||||| | |||| || | Sbjct 9561 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9502 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| ||||| ||| || | |||||||| || || || ||||| || || Sbjct 9501 TCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9442 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || | ||| ||| || | | ||| || || || | || |||| ||||| Sbjct 9441 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 9382 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || | |||||| || ||||||||||| Sbjct 9381 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq3991 Length=17808 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| | || | ||||||||| |||||||| || | |||| | | Sbjct 17042 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCA 17101 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || ||| || | |||||||| || || || ||||| || || Sbjct 17102 TCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 17161 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || | ||| ||| || | | ||| || || || | || |||| ||||| Sbjct 17162 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17221 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || | |||||| || ||||||||||| Sbjct 17222 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| | || | ||||||||| |||||||| || | |||| || | Sbjct 17270 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 17329 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| || || ||| || | ||||| || || || |||||||| || || Sbjct 17330 TCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTA 17389 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || | ||| ||| || | | ||| || || || | || |||| ||||| Sbjct 17390 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17449 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || | |||||| || ||||||||||| Sbjct 17450 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 >seq2970 Length=24236 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| | || | ||||||||| || |||||||| | ||| || | Sbjct 7859 CGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCA 7800 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| || || ||| || | ||||| || || || |||||||| || || Sbjct 7799 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 7740 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || | ||| ||| || | | ||| || || || | || |||| ||||| Sbjct 7739 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 7680 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || | |||||| || ||||||||||| Sbjct 7679 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318387050121450