Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3991 111 1e-19 seq2970 105 5e-18 seq1539 96.9 2e-15 >seq3991 Length=17808 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || ||| ||||||||| ||||| || ||| || ||| |||| Sbjct 17045 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCT 17104 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| |||| |||||||| || || | || || ||||| Sbjct 17105 TCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 17164 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTAT--CTGCCGGCTCCACATCGACCGTAATTG 44087 | || ||| ||| || || ||| |||| |||| ||| || || | || || | Sbjct 17165 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGC--TCTCGACCTCCAAGGTTATGG 17222 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| ||||| |||||||| |||||||| Sbjct 17223 TTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || ||| ||||| || || |||||| || ||| |||| Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||||||||||||| ||||||||||| |||||| | || | ||| || || || Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| || || | | || ||||| | || || | || || ||| Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||| || |||||||| || ||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2970 Length=24236 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 || ||||||||| | | || ||||| || || || ||| ||||| || || ||||| Sbjct 14499 TCCACCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATC 14440 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 | || ||| |||| |||||||||||||||||||| ||||| |||||||| ||| | Sbjct 14439 GGCCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGG 14380 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | ||| || || || |||||| || || | | |||||||| | | Sbjct 14379 TGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCG-AACTTT 14321 Query 44071 CACA-TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || | || || ||||| ||||| | ||| ||||| || |||||||| Sbjct 14320 CACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || |||||||| || || || ||| || || |||| ||| Sbjct 14249 ACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCC 14190 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||||||||| |||| ||||||||| ||| | || | ||| || || || Sbjct 14189 AATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 14130 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA-TCGACCGTAATTGTTTT 44091 |||||| || || | | |||||||| | | |||| || | || || ||||| Sbjct 14129 ATTTTTGCCTTCACATTGTCTACAGTATCCG-AACTTTCACATTCCAGGGTTATGGTTTT 14071 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || |||||||| || ||||| Sbjct 14070 TCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq1539 Length=61058 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || ||| ||||| || || |||||| || || |||| Sbjct 9558 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9499 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||||||||||||||| || | |||||||| || || | || || ||||| Sbjct 9498 TCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9439 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTAT--CTGCCGGCTCCACATCGACCGTAATTG 44087 | || ||| ||| || || ||| |||| |||| ||| || || | || || | Sbjct 9438 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGC--TCTCGACCTCCAAGGTTATGG 9381 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| ||||| |||||||| |||||||| Sbjct 9380 TTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| ||||||||| ||||| || ||| || || |||| Sbjct 9786 AACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 9727 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||||||| ||||| || | |||||||| || || | || || ||||| Sbjct 9726 TCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9667 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTAT--CTGCCGGCTCCACATCGACCGTAATTG 44087 | || ||| ||| || || ||| |||| |||| ||| || || | || || | Sbjct 9666 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGC--TCTCGACCTCCAGAGTTATGG 9609 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| | || ||||| || |||||||| Sbjct 9608 TTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354342944777700