Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2970 122 7e-23 seq3991 109 5e-19 seq1539 104 2e-17 >seq2970 Length=24236 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| |||||||| ||| ||| ||| ||||||| Sbjct 14249 ACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCC 14190 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| |||| || ||||| || | || || ||||| Sbjct 14189 AATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 14130 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||||| | | | |||| ||| | ||| ||||| ||| |||||||| Sbjct 14129 ATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTT 14070 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| ||||| |||||||| |||||| Sbjct 14069 CCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | ||| |||||||| || || | |||||||| |||||||||||| Sbjct 7873 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGG 7814 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| |||||| | |||||| |||||| | || || | |||||||| | Sbjct 7813 CTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 7754 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || ||||| | || ||| |||||| | ||| | ||| | || Sbjct 7753 GTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 7694 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct 7693 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | ||| ||||| || || || | || ||||| |||||||||||| Sbjct 8329 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 8270 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| |||| |||||| | |||||| |||||| | || || | |||||||| | Sbjct 8269 CCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 8210 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || ||||| | || ||| |||||| | ||| | ||| | || Sbjct 8209 GTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 8150 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct 8149 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | | ||| ||||| || || || || || ||||| |||||||||||| || Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||||||||||||||| || ||| | || | | || ||||| || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| |||||| ||||| | | | |||| ||| | ||| | Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACAT 14316 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| ||||||| ||||| || |||||||||||| Sbjct 14315 TCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 >seq3991 Length=17808 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | ||| |||||||| || || | |||||||| || ||||| ||| Sbjct 17028 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 17087 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| ||||||||||||||| |||||| | || || | || ||||| | Sbjct 17088 CCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTG 17147 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || || || | || ||| |||||| | ||| | ||| | || Sbjct 17148 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 17207 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct 17208 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | ||| |||||||| || || | |||||||| || ||||| ||| Sbjct 17256 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 17315 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| |||||| | |||||| |||||| | || || | |||||||| | Sbjct 17316 CCAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 17375 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || || || | || ||| |||||| | ||| | ||| | || Sbjct 17376 GTATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 17435 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct 17436 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | |||||||||||| || || || || ||||| |||||||||||| Sbjct 12060 TTCCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGG 12119 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| | ||| || | |||||| || ||| |||| | || ||||| || | Sbjct 12120 CCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTG 12179 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || || ||||| ||||| ||||| | | | || | ||| | ||| Sbjct 12180 GGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGC 12239 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| ||| |||||||| || || | ||||| |||||||| |||||| Sbjct 12240 ATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || || ||||| |||||||||||| ||| |||| ||||||| Sbjct 11852 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCC 11911 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT-CGACGGGCACGCCTTCTTTGTCGGC 20118 |||||||| || ||| |||| || | || || | || |||| | || || ||||| Sbjct 11912 AATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG-ATACCCTCCTTGTCCTG 11970 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||||| | | | |||| ||| | ||| ||| | ||| || ||||| Sbjct 11971 GATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATAGTTTT 12030 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || |||| ||||| || |||||||||||| Sbjct 12031 TCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 >seq1539 Length=61058 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | ||| ||||| || || || | || ||||| |||||||||||| Sbjct 9575 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 9516 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| ||||||||||||||| || ||| | || || | || ||||| | Sbjct 9515 CCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTG 9456 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || || || | || ||| |||||| | ||| | ||| | || Sbjct 9455 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9396 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct 9395 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | ||| ||||| || || || | || ||||| |||||||||||| Sbjct 9347 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 9288 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| |||||| | |||||| |||||| | || || | || ||||| | Sbjct 9287 CCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTG 9228 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || || || | || ||| |||||| | ||| | ||| | || Sbjct 9227 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9168 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| ||||||| ||||| || |||||||||||| Sbjct 9167 CCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | | |||||||||||| || || | |||||||| || ||||| ||| Sbjct 9803 TTCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 9744 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| |||||| | |||||| |||||| | || || | || ||||| | Sbjct 9743 CCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTG 9684 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| || || || | || ||| |||||| | ||| | ||| | || Sbjct 9683 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9624 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || |||||||| ||||||| ||||| || |||||||||||| Sbjct 9623 CCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419073143397525