Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3991 116 9e-21 seq1539 113 1e-19 seq2970 104 5e-17 seq27157 86.0 1e-11 seq2297 86.0 1e-11 >seq3991 Length=17808 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || ||||| ||||| | | ||| | || |||||||||||||| || ||||| Sbjct 17294 TCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAG 17353 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||||||| ||||| || || ||||| ||||||||||| ||||| Sbjct 17354 ATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 17413 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| | || || || || || || | ||||| ||| Sbjct 17414 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 17473 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 17474 AAAATTTGCATT 17485 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | | || | ||| | || || || || || || || || || Sbjct 12059 ATTCCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCG 12118 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | ||| | ||| || || ||||||||||| |||||||| | || ||||| || || Sbjct 12119 GCCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGT 12178 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| || || || || ||||| ||||||||||| | ||| Sbjct 12179 GGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCG 12238 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || | || || || || || || || ||||| ||||| ||||||||| Sbjct 12239 CATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || ||||| ||||| | | ||| | || ||||| | |||||| || ||||| Sbjct 17066 TCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAG 17125 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||||| || || || || ||||| ||||||||||| ||||| Sbjct 17126 ATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 17185 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| | || || || || || || | ||||| ||| Sbjct 17186 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 17245 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 17246 AAAATTTGCATT 17257 >seq1539 Length=61058 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || ||||| ||||| | | ||| | || ||||| ||||||||||| ||||| Sbjct 9765 TCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAG 9706 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||||| || || || || ||||| ||||||||||| ||||| Sbjct 9705 ATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 9646 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| || || || || || || || || ||||| || Sbjct 9645 TCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACG 9586 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 9585 AAAATTTGCATT 9574 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || || || | | ||| | || ||||| ||||||||||| ||||| Sbjct 9309 TCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAG 9250 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||||| || || || || ||||| ||||||||||| ||||| Sbjct 9249 ATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 9190 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| || || || || || || || || ||||| || Sbjct 9189 TCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACG 9130 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 9129 AAAATTTGCATT 9118 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || || || | | ||| | || ||||| | ||||||||| ||||| Sbjct 9537 TCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAG 9478 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||||| || || || || ||||| ||||||||||| ||||| Sbjct 9477 ATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 9418 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| | || || || || || || | ||||| ||| Sbjct 9417 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 9358 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 9357 AAAATTTGCATT 9346 >seq2970 Length=24236 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || || || || || | || ||| | || ||||| |||||||| || ||||| Sbjct 7835 TCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAG 7776 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||||||| ||||| || || || || ||||||||||| ||||| Sbjct 7775 ATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTA 7716 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| | || || || || || || | ||||| ||| Sbjct 7715 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 7656 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 7655 AAAATTTGCATT 7644 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || || || | | ||||| || ||||| |||||||| || ||||| Sbjct 8291 TCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAG 8232 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||||||| ||||| || || || || ||||||||||| ||||| Sbjct 8231 ATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTA 8172 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| | || || || || || || | ||||| ||| Sbjct 8171 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 8112 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 8111 AAAATTTGCATT 8100 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || || || | | ||||| || ||||| ||||||||||| ||||| Sbjct 8063 TCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAG 8004 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||||||| || || ||||| || || ||||||||||| | ||| Sbjct 8003 ATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTA 7944 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || || || || || | ||||| ||| Sbjct 7943 TCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACA 7884 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 7883 AAAATTTGCATT 7872 >seq27157 Length=1261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| ||||| || ||||| || ||||||||||| || || |||||||| | || Sbjct 873 TGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAATCGTG 814 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 ||||| | || || || | ||||| ||||| || || || || || ||||| || ||| Sbjct 813 TCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGC 754 Query 104558 AT 104559 || Sbjct 753 AT 752 >seq2297 Length=32998 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| ||||| || ||||| || ||||||||||| || || |||||||| | || Sbjct 3036 TGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAATCGTG 2977 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 ||||| | || || || | ||||| ||||| || || || || || ||||| || ||| Sbjct 2976 TCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGC 2917 Query 104558 AT 104559 || Sbjct 2916 AT 2915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149915425846700