Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq7334 96.9 3e-15 seq2865 86.0 6e-12 >seq7334 Length=5206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 5404 GCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAG 5463 ||| |||||||| ||||| || ||||| ||||| || ||||| || |||||||||||||| Sbjct 3243 GCCACGGTAGTCCTCGTCAATCACGCCGGCGCCGACATCGATGAAATGTTTGACCGCAAG 3302 Query 5464 GCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGA 5504 |||||||| || || | ||||| ||| ||| ||||||| Sbjct 3303 ACCGGAACGAGGCGCGACTCGTCCATAGTGACCGGGTGGGA 3343 >seq2865 Length=22293 Score = 86.0 bits (94), Expect = 6e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 ||||| || | |||||| ||| || || ||||| ||||| | | ||||| | Sbjct 11472 CCGGTGGATTCAAATCCATTACGGCCACGATCCGTGTCCTCCAAATCGGTCACCTCCTCC 11531 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCC-CTTCTTAAC 5358 | | ||| | |||||||||||| |||| ||||||| || ||| || | | | | Sbjct 11532 AATATTGGCCGGCTTATGCGTTCGCAGATTAATTGAGCTACCCGGTCACCTCGGCGGATC 11591 Query 5359 CTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTC 5418 | |||||| | | | ||| |||| | ||| | || | ||| ||||| || || Sbjct 11592 AT-AAAGTCCGATTCACTGTGGTTGAACAATAACACTCGGAGTTCGCCGCGGTAATCCTC 11650 Query 5419 GTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGC 5478 ||| | |||||| || || || || || || ||||||| ||||| |||||||| || || Sbjct 11651 GTCAACAACGCCGGCTCCGACATCTATGAAATGTTTGAGGGCAAGTCCGGAACGGGGCGC 11710 Query 5479 TATGCGTCCGTAGCAACCAGGTGG 5502 || || |||||| ||| | ||| Sbjct 11711 AATTCGCCCGTAGTGACCGGCTGG 11734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447187773638000