Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3991 98.7 8e-16 seq2970 89.7 4e-13 >seq3991 Length=17808 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| || || ||||||||| ||||||||||| ||||| || | ||| Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || || || || | |||| || || || || ||| || | || ||||||||| Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| ||| | | ||| |||||| | | || || | ||||||||| Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||||||||||||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2970 Length=24236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||| ||||| ||| | || || || || || || | | Sbjct 8064 CTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAA 8005 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA-TAG 48653 || | || || ||||| ||| | || ||||||||| | || || ||||| | || Sbjct 8004 GATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGATCTT-TGCTTTAATAT 7946 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || || || ||| ||| ||| | ||||||||||| ||||| | |||||||| Sbjct 7945 TATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCA 7886 Query 48714 CAAAAATCTGCAT 48726 ||||||| ||||| Sbjct 7885 CAAAAATTTGCAT 7873 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||| ||||| || | || |||| || || || | | Sbjct 14460 CTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAA 14401 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || ||||| ||||||||| || | || ||||||||| ||||| ||| | | Sbjct 14400 GATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATT 14341 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||| ||||| | | || || | ||||||||||| ||||| ||||||||||| Sbjct 14340 GTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCAC 14281 Query 48715 AAAAATCTGCAT 48726 ||||| ||||| Sbjct 14280 GAAAATTTGCAT 14269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420735104750525