Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2970 131 2e-25 seq3991 127 2e-24 seq1539 116 3e-21 seq9051 91.5 1e-13 >seq2970 Length=24236 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | ||||| |||||||| | || || |||||||| | ||| |||||| | Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| |||||||| ||||||| || | ||||||||| || || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||||||||||| || | | ||||| || | || Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACAT 14316 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||||||||| || ||||||||||| || || ||||| Sbjct 14315 TCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||| || | |||| |||||||| | || ||||| ||||| | | Sbjct 14279 AAAATTTGCATTCCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATG 14220 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || |||| | ||| |||| |||||||| |||| || | | |||| Sbjct 14219 TTGTAGTCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGC 14160 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || || ||||| || ||||| | ||||||||||| || | | ||||| || Sbjct 14159 TGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCC 14100 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | || ||||||||||| || || ||||||||||| |||||||| Sbjct 14099 GAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Score = 118 bits (130), Expect = 9e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| || | ||||| |||||||| | || | |||||||| | Sbjct 8112 AAAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGAT 8053 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| || ||| | ||| || || |||||||| ||||||| | | ||| Sbjct 8052 GTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTG 7993 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| | ||||||||||| |||||| || ||||| || | | | ||||| Sbjct 7992 TTGATCAGTCGGAATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTATCAATTGTGTC 7933 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || | || |||||||| || || | |||||||||||| || ||||| Sbjct 7932 AGTACTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||| || | ||||| |||||||| | || | |||||||| | | Sbjct 8339 AAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATG 8280 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| || ||| | ||| || || ||||| || ||||||| | | ||| Sbjct 8279 TTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGT 8220 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| | || || || || |||||| || ||||| || || | | || ||| Sbjct 8219 TGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 8160 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || ||||||||||| || | |||||||||||| || ||||| Sbjct 8159 CTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| || | ||||| ||||| || | || | || ||||| | Sbjct 7884 AAAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGAT 7825 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| | |||| | ||| || || ||||| || ||||||| | | ||| Sbjct 7824 GTTGTAATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTG 7765 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| | || || || || |||||| || ||||| || || | | || || Sbjct 7764 TTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATC 7705 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | || ||||||||||| || | |||||||||||| || ||||| Sbjct 7704 ACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 >seq3991 Length=17808 Score = 127 bits (140), Expect = 2e-24 Identities = 177/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || |||||| || | ||||||||||| || | || || |||| Sbjct 12042 TTTTTACGAAAATTTGCATTCCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCT 12101 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||| |||||| || ||| |||||| || |||||||| |||| || | Sbjct 12102 TTTGGATGTTGTAATCGGCCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCA 12161 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| || || || || ||||| || ||||| | ||||| ||||| || | | | Sbjct 12162 ACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTA 12221 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 | || |||| ||| || | || ||||||||||| || || ||||||||||| | Sbjct 12222 CGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAA 12281 Query 95001 TCTGCAT 95007 ||||||| Sbjct 12282 TCTGCAT 12288 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| |||||||| | || || |||||||| | ||| |||||| | Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| |||||||| |||| || | | |||||| || || || Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||||| ||||| || | | ||||| |||| || Sbjct 11954 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACAT 12013 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||||||||| |||||||| || || || ||||| Sbjct 12014 TCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||| || | ||||| ||||| || | || | || ||||| | Sbjct 17018 AAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATA 17077 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| | ||| |||| ||||| || ||||||| | | |||| Sbjct 17078 TTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGC 17137 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| | ||||| || || || ||| || ||||| || || | | || ||| Sbjct 17138 TGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 17197 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || ||||||||||| || | |||||||||||| || ||||| Sbjct 17198 CTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| || | ||||| ||||| || | || | || ||||| | Sbjct 17245 AAAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGAT 17304 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || ||| || |||| | ||| || || ||||| || ||||||| | | ||| Sbjct 17305 ATTGTAGTCGGCCAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTG 17364 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| | || || || || || ||| || ||||| || || | | || || Sbjct 17365 TTGATCAGTCGGTATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC 17424 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | || ||||||||||| || | |||||||||||| || ||||| Sbjct 17425 ACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 >seq1539 Length=61058 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||| || | ||||| |||||||| | || | |||||||| | | Sbjct 9585 AAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATG 9526 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| || |||| | ||| |||| |||||||| ||||||| | | |||| Sbjct 9525 TTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGC 9466 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| | ||||| || || || ||| || ||||| || || | | || ||| Sbjct 9465 TGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 9406 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || ||||||||||| || | |||||||||||| || ||||| Sbjct 9405 CTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| || | ||||| |||||||| | || | |||||||| | Sbjct 9358 AAAAATTTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGAT 9299 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| || |||| | ||| || || |||||||| ||||||| | | ||| Sbjct 9298 GTTGTAATCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTG 9239 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| | ||||| || || || ||| || ||||| || || | | || || Sbjct 9238 CTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC 9179 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | || ||||||||||| || || |||||||| || || ||||| Sbjct 9178 ACTGCTCTCGACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||| || | ||||||||||| || | || | || ||||| | Sbjct 9813 AAAATTTGCATTCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATA 9754 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || |||| | ||| || || |||||||| ||||||| | | |||| Sbjct 9753 TTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGC 9694 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| | ||||| || || || ||| || ||||| || || | | || ||| Sbjct 9693 TGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 9634 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || ||||||||||| || || |||||||| || || ||||| Sbjct 9633 CTGCTCTCGACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq9051 Length=5414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| || || ||||| ||||| | ||| || ||||||||| ||| ||| Sbjct 4641 TGCTGATCTGGCGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTG 4700 Query 94946 TCAGCGTG-GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | || ||||| |||| |||||||| || ||||| |||||||| || || || || Sbjct 4701 TCA-CTTGCCTCGACTTCAAGAGTGATGGTCTTGCCAGTGAGAGTTTTGACGAAAATTTG 4759 Query 95005 CATG 95008 |||| Sbjct 4760 CATG 4763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447727894089000