Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq711 98.7 2e-16 seq1133 89.7 8e-14 seq363 89.7 8e-14 seq7721 84.2 3e-12 seq4020 84.2 3e-12 seq1736 84.2 3e-12 seq1714 84.2 3e-12 seq985 84.2 3e-12 seq9309 80.6 4e-11 seq7635 80.6 4e-11 seq5003 80.6 4e-11 seq3007 80.6 4e-11 seq802 80.6 4e-11 >seq711 Length=50253 Score = 98.7 bits (108), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || |||||||||||||| ||||||||||| || ||||| |||||||| || |||| Sbjct 49278 TCTTGCGCGATAACATCCAAGGGATCACCAAGCCCGCGATCCGGCGTCTGGCCCGACGTG 49219 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || |||| || |||| || || ||||| | | Sbjct 49218 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACCCGCTCCGTGCTGAAGGTGT 49159 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| || ||| Sbjct 49158 TCCTGGAGAATGTCATCCGGGACGCT 49133 Score = 89.7 bits (98), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 20001 TCTTGCGCGATAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 20060 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || |||| || |||| || || ||||| | | Sbjct 20061 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACCCGCTCCGTGCTGAAGGTGT 20120 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| || ||| Sbjct 20121 TCCTGGAGAATGTCATCCGGGACGCT 20146 >seq1133 Length=78620 Score = 89.7 bits (98), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 75155 TCTTGCGCGATAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 75096 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || |||| || |||| || || ||||| | | Sbjct 75095 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACCCGCTCCGTGCTGAAGGTGT 75036 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| || ||| Sbjct 75035 TCCTGGAGAATGTGATCCGGGACGCT 75010 >seq363 Length=79518 Score = 89.7 bits (98), Expect = 8e-14 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || ||||||||||| |||| Sbjct 35624 TCTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCATTCGACGTCTGGCTCGACGTG 35683 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || |||||| ||||||| || |||| || |||| Sbjct 35684 GAGGTGTGAAGCGTATCTCTGGGCTGATCTACGAGGAGA 35722 >seq7721 Length=7142 Score = 84.2 bits (92), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 4233 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 4292 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || |||| || |||| ||| || | || | | Sbjct 4293 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACTCGCTCCGTGCTCAAAGTGT 4352 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| ||| ||| Sbjct 4353 TCCTGGAGAATGTCATCCGTGACGCT 4378 >seq4020 Length=28022 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || ||||||||||| |||| Sbjct 9037 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCTCGACGTG 8978 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 | || || ||||| ||||||| || |||| || || | ||| Sbjct 8977 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAAACTCG 8935 >seq1736 Length=38868 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 2807 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 2866 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 | || || ||||| ||||||| || |||| || |||| ||| Sbjct 2867 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACTCG 2909 Score = 80.6 bits (88), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 1167 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 1226 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||| ||||||| || |||| || |||| Sbjct 1227 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGA 1265 >seq1714 Length=37518 Score = 84.2 bits (92), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| ||||||| Sbjct 30120 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCTGCGATTCGGCGTCTGGCCCGTCGTG 30061 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || |||| || || | ||| || | ||| | | Sbjct 30060 GCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAAACTCGCTCCGTGCTCAAGGTGT 30001 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| || ||| Sbjct 30000 TCCTGGAGAATGTCATCCGGGACGCT 29975 >seq985 Length=39609 Score = 84.2 bits (92), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || |||||||| || || || || |||||||| || |||| Sbjct 28391 TCTTGCGCGATAACATCCAGGGCATCACCAAACCCGCCATTCGGCGTCTGGCCCGACGTG 28450 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || |||| || |||| || || ||||| | | Sbjct 28451 GCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGACCCGCTCCGTGCTGAAGGTGT 28510 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| || ||| Sbjct 28511 TCCTGGAGAATGTGATCCGGGACGCT 28536 >seq9309 Length=1763 Score = 80.6 bits (88), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 1102 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 1043 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||| ||||||| || |||| || |||| Sbjct 1042 GGGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGA 1004 >seq7635 Length=7239 Score = 80.6 bits (88), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || || ||||| || ||||||||||| || || ||||||||||| || |||| Sbjct 5710 TCTTGCGGGACAATATCCAGGGCATCACCAAGCCCGCGATTCGTCGTCTGGCCCGACGTG 5769 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||| ||||||| || |||| || |||| Sbjct 5770 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGA 5808 >seq5003 Length=14856 Score = 80.6 bits (88), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 2152 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 2211 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||| ||||||| || |||| || |||| Sbjct 2212 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGA 2250 >seq3007 Length=36603 Score = 80.6 bits (88), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || || ||| |||| || |||| Sbjct 16976 TCTTGCGCGATAACATCCAGGGCATCACCAAGCCCGCGATTCGACGTTTGGCCCGACGTG 16917 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| || | || || |||| || || ||||| | | Sbjct 16916 GAGGTGTGAAGCGAATCTCTGGCCTGATTTACGAGGAGACCCGCTCCGTGCTGAAGGTGT 16857 Query 16572 TCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||| || |||| || ||| Sbjct 16856 TCCTGGAGAATGTGATCCGGGACGCT 16831 >seq802 Length=58851 Score = 80.6 bits (88), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || || |||||||| || |||| Sbjct 58687 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCCGCGATTCGGCGTCTGGCCCGACGTG 58746 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||| ||||||| || |||| || |||| Sbjct 58747 GAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGA 58785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78983289288825