Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12421 104 6e-17 seq615 100 7e-16 seq5492 98.7 3e-15 seq2518 95.1 3e-14 >seq12421 Length=2797 Score = 104 bits (114), Expect = 6e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 ||||||| ||||| || || || |||||| ||||||| || |||||||||||||||| Sbjct 1361 TCGCAGACCGAGACCGGCACCCCATATATGGTGTACAAGGACGCGTGCAACCGCAAGTCG 1302 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||||||| |||| || || || || |||||| || || ||||| || || ||| Sbjct 1301 AACCAGCAGAACCTCGGGACCATCAAGTGCTCCAACCTGTGCACTGAGATCATCGAGTAC 1242 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | | ||| |||||| || || || ||| | || || || || || Sbjct 1241 TCTTCGCCCACCGAGACCGCAGTGTGCAACTTGGCCTCCATTGCCCT 1195 >seq615 Length=100005 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 |||| ||| || ||||| ||||||| || || || || || || ||| |||||| Sbjct 8088 AGCTGTGGCGAGCGATCATCACCTCGCAGACCGAAACTGGCACCCCGTACATGGTGTACA 8029 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 | || |||||||||||||||| ||||||||| |||| || || || || ||||| Sbjct 8028 AGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGGACCATCAAGTGCTCCAACC 7969 Query 364238 TATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGT 364297 | || || ||||| ||||| ||| | | ||| |||||| || || || ||| | || | Sbjct 7968 TGTGCACTGAGATCATTGAGTACTCTTCGCCCACCGAGACCGCAGTTTGCAACTTGGCCT 7909 Query 364298 CGATCGCGCT 364307 | || || || Sbjct 7908 CCATTGCCCT 7899 >seq5492 Length=8422 Score = 98.7 bits (108), Expect = 3e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 ||||||| || || || || || || ||| ||||||| || |||||||||||||||| Sbjct 5601 TCGCAGACCGAAACCGGCACCCCGTACATGGTGTACAAGGACGCGTGCAACCGCAAGTCG 5660 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 |||||||| |||| || || || || |||||| ||||| ||||| || || ||| Sbjct 5661 AACCAGCAAAACCTCGGGACCATCAAGTGCTCCAACCTGTGTACTGAGATCATCGAGTAC 5720 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | | ||| ||||||||| || || ||| | || || || || || Sbjct 5721 TCTTCGCCCACCGAGACTGCGGTGTGCAACTTGGCCTCCATTGCCCT 5767 >seq2518 Length=16751 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 |||| ||| || ||||| ||||||| || || || || || || ||| |||||| Sbjct 10744 AGCTGTGGAGAGCGATCATCACCTCGCAGACCGAAACCGGCACCCCGTACATGGTGTACA 10685 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 | || |||||||||||||||| ||||||||| | || || || || || ||||| Sbjct 10684 AGGACGCGTGCAACCGCAAGTCGAACCAGCAGAATCTCGGGACCATCAAGTGCTCCAACC 10625 Query 364238 TATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGT 364297 | || |||||||| || || ||| | | ||| |||||| || || || ||| | || | Sbjct 10624 TGTGCACCGAGATCATCGAGTACTCTTCGCCCACCGAGACCGCAGTGTGCAACTTGGCCT 10565 Query 364298 CGATCGCGCT 364307 | || || || Sbjct 10564 CCATTGCCCT 10555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301674911110550