Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2970 123 2e-23 seq1539 84.2 2e-11 seq6138 82.4 7e-11 >seq2970 Length=24236 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| || || |||||| | || ||| | || |||||| || Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| |||||| || ||||| || |||||||| | ||||| Sbjct 7704 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 7763 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATA 24168 ||| | ||||| | | || || ||||||||||||| | | || | || |||||| | Sbjct 7764 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCG-CACTTTAGCCGATTACA 7822 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| |||||||| | || ||||||| || || | | || |||||| Sbjct 7823 ACATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCGCCTCAGGGGAGGA 7872 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| || || |||||| | || ||| | || |||||| || Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| |||||| || ||||| || |||||||| | ||||| Sbjct 8160 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 8219 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||| | | || || ||||||||||||| | ||| | |||||| || Sbjct 8220 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8279 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || | || |||| || || || | | || |||||| Sbjct 8280 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCGCCTCAGGGGAGGA 8328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| || || || ||| | || ||| | || |||||| | Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | | ||| |||||| || ||||| ||||| || || | ||||| Sbjct 7932 TGACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCA 7991 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||| | | || || ||||||||||||| | ||| | |||||| || Sbjct 7992 ACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8051 Query 24170 CATTCAAAAAGA 24181 ||| ||||| || Sbjct 8052 CATCCAAAAGGA 8063 >seq1539 Length=61058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | || |||||| | || ||| | || |||||| || Sbjct 9118 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAGGTCGAGAGCAG 9177 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| |||||| || || || || ||||| || | ||||| Sbjct 9178 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9237 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | | || || ||||||||||||| | | | | |||||| || Sbjct 9238 GCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGATTACAA 9297 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || | || |||| || || || | | || |||||| Sbjct 9298 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCGCCTCAGGGGAGGA 9346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | || |||||| | || || | || |||||| || Sbjct 9574 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACTCTGGAGGTCGAGAGCAG 9633 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| |||||| || || || || ||||| || | ||||| Sbjct 9634 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9693 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | | || || ||||||||||||| | | | | ||| || || Sbjct 9694 GCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGACTACAA 9753 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || |||||||| | || ||||||| ||||| | | || |||||| Sbjct 9754 TATCCAAAAAGAGGCCACCCTTCATTTGGTGTTGCGCCTCAGGGGAGGA 9802 >seq6138 Length=12267 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | || || ||| | || || | || |||||||||| Sbjct 8597 AATGCAGATTTTCGTCAAAACTCTGACAGGCAAAACCATCACTCTGGAGGTCGAGGCCAG 8538 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| ||| | ||||| ||||| |||||||||||||| || || ||||| Sbjct 8537 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCGCCGGATCA 8478 Query 24110 ACAGAGACTG 24119 |||| | ||| Sbjct 8477 ACAGCGCCTG 8468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429409264581375