Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3991 118 1e-21 seq10184 114 1e-20 seq2067 114 1e-20 seq2970 109 5e-19 seq8832 102 8e-17 seq1539 89.7 5e-13 seq2518 87.8 2e-12 seq615 87.8 2e-12 seq6138 86.0 6e-12 >seq3991 Length=17808 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| ||| ||||| | ||| ||||||||||| |||||||||||| || || || Sbjct 12074 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCA 12133 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| || || || ||||| | || || || || |||||||| ||||| || || ||| Sbjct 12134 TCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTG 12193 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||||||| ||| | | || || ||||| | ||| || | ||| | | Sbjct 12194 TCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATG 12253 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || ||||| ||||| || ||||||||||| Sbjct 12254 GTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| ||||||||||| |||||||||||| || || || Sbjct 11846 CGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 11905 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | || || ||||| | || | || ||||||||||| ||||| || || ||| Sbjct 11906 TCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTG 11965 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||||||| ||| | | || |||||||| | || || | ||| | Sbjct 11966 TCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATA 12025 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || ||||||||||||||||| ||||| Sbjct 12026 GTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 >seq10184 Length=3342 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131050 TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAA 131109 ||||||||||| ||| || |||||| |||||| || || ||||| ||| |||| | Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACA 131169 |||||||||||||| ||||| ||||| ||||| ||| || ||| | | |||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 131170 GTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATC 131229 || ||| | ||||| | || | ||| | || || ||||| || || || ||||| || Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 131230 TGCATG 131235 |||||| Sbjct 968 TGCATG 973 >seq2067 Length=34267 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131050 TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAA 131109 ||||||||||| ||| || |||||| |||||| || || ||||| ||| |||| | Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACA 131169 |||||||||||||| ||||| || || ||||| ||| || ||| | | |||||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 131170 GTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATC 131229 |||||| | ||||| | || | ||| | || || ||||| || || || ||||| || Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 131230 TGCATG 131235 |||||| Sbjct 29760 TGCATG 29765 >seq2970 Length=24236 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| || || || | ||| ||||||||||| |||||||||||| || || || Sbjct 14483 CGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCA 14424 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | || || ||||| |||| ||||| ||||| ||||| ||||| || || ||| Sbjct 14423 TCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTG 14364 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||| | | || |||||||| | || || | ||| | | Sbjct 14363 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14304 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| ||||| |||||||| |||||||| ||||| Sbjct 14303 GTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| || || ||||| |||||||| ||| || ||||| Sbjct 14255 CGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCA 14196 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | || || ||||| | || | || ||||| ||||| ||||| || || ||| Sbjct 14195 TCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTG 14136 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||| | | || |||||||| | || || | ||| | | Sbjct 14135 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14076 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| ||||| || ||||| || ||||||||||| Sbjct 14075 GTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq8832 Length=4481 Score = 102 bits (112), Expect = 8e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131050 TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAA 131109 ||||||||||| ||| || |||||| ||||| || || ||||| ||| |||| | Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACA 131169 || ||||||||||| ||||| || || || || ||| || ||| | | |||||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 131170 GTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATC 131229 || ||| | ||||| ||||| | || | || || ||||| || || || ||||| || Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 131230 TGCATG 131235 |||||| Sbjct 782 TGCATG 787 >seq1539 Length=61058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| || || || | ||| | ||||||||| |||||||||||| || ||||| Sbjct 9333 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9274 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || || || || || |||| | || ||||| || | || || || || || Sbjct 9273 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9214 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||||| || ||| || | | || | ||||| || ||||| || | ||| | Sbjct 9213 TCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTAT 9155 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| ||||| || ||||| |||||||| ||||| Sbjct 9154 GGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| || || || | ||| | ||||||||| |||||||||||| || ||||| Sbjct 9561 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9502 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | || || ||||| |||| | || ||||| || | || || || || || Sbjct 9501 TCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9442 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||||| || ||| || | | || | ||||| || ||||| || | ||| | Sbjct 9441 TCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 9383 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| ||||| | |||||| || ||||| ||||| Sbjct 9382 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq2518 Length=16751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCC-TCGGCGTCGCTGTATTGTACGATCT 145682 ||| || || ||||| || || ||||| ||||| | |||| | ||| | | ||||| Sbjct 10557 GGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGA-GTACTCGATGATCT 10615 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 ||| ||||| ||| || |||||||| || ||||| ||||| || || | ||||| Sbjct 10616 CGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGACTTGCGGTTGC 10675 Query 145743 ACGCGTCCTTGTAGAGCATGTACGG 145767 ||||||||||||| | ||||||||| Sbjct 10676 ACGCGTCCTTGTACACCATGTACGG 10700 >seq615 Length=100005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCC-TCGGCGTCGCTGTATTGTACGATCT 145682 ||| || || ||||| || |||||||| ||||| | |||| | ||| | | ||||| Sbjct 7901 GGCAATGGAGGCCAAGTTGCAAACTGCGGTCTCGGTGGGCGAAGA-GTACTCAATGATCT 7959 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 | | ||||| ||| || |||||||| || || || ||||| || || | ||||| Sbjct 7960 CAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGACTTGCGGTTGC 8019 Query 145743 ACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 ||||||||||||| | ||||||||| |||||| || ||||| Sbjct 8020 ACGCGTCCTTGTACACCATGTACGGGGTGCCAGTTTCGGTCTGCG 8064 >seq6138 Length=12267 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACA 131169 ||||| || ||||| ||||| ||||||||||| ||| || ||||| | ||| | Sbjct 8472 CGCTGTTGATCCGGCGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATG 8531 Query 131170 GTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATC 131229 || ||| ||| ||||| || | || | |||||| || || |||||||| ||||||||| Sbjct 8532 GTGTCGCTGGCCTCGACCTCCAGAGTGATGGTTTTGCCTGTCAGAGTTTTGACGAAAATC 8591 Query 131230 TGCAT 131234 ||||| Sbjct 8592 TGCAT 8596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471419686416000