Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2970 132 4e-26 seq3991 118 9e-22 seq10184 102 7e-17 seq2067 102 7e-17 seq1539 98.7 8e-16 seq8832 93.3 3e-14 >seq2970 Length=24236 Score = 132 bits (146), Expect = 4e-26 Identities = 171/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || || || || ||||| ||||||||||||||| Sbjct 14267 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCC 14208 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| || ||| |||| ||||| || || ||| || Sbjct 14207 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGG 14148 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TC 16884 | ||||| ||||| || ||||| |||||| | | | ||||| | ||| | || Sbjct 14147 ATACCCTCCTTGTCCTGGATTTTTGC--CTTCACATTGTCTACAGTAT--CCGAACTTTC 14092 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct 14091 ACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || || || ||||||||||| |||||||| |||||| Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| || ||| | || | || || || ||| || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TC 16884 | ||||| ||||| || ||||| |||||| | | | ||||| | ||| | || Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGC--CTTCACATTGTCTACAGTAT--CCGAACTTTC 14320 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||| ||||||||||||||||| ||||| || ||||| |||||| Sbjct 14319 ACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| || || || | ||||||||| |||||||| |||||| Sbjct 8327 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8268 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | |||||| |||||| | || || || ||||| || || Sbjct 8267 AAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 8208 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| | || ||||| ||||| | | | || || | | ||| Sbjct 8207 ATGCCCTCCTTGTCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 8150 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| |||||||||||||||| ||||| |||||||| |||||| Sbjct 8149 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||| || || | ||| ||||| |||||||| ||||| Sbjct 7871 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCT 7812 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||| |||||| | || || || ||||| || || Sbjct 7811 AAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 7752 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| | || ||||| ||||| | | | || || | | ||| Sbjct 7751 ATGCCCTCCTTGTCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 7694 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| |||||||||||||||| ||||| |||||||| |||||| Sbjct 7693 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 >seq3991 Length=17808 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || || ||||||||||| |||||||| |||||| Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || ||| |||| || || || |||||| || Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| |||| | |||||| | | | ||||| || || | Sbjct 11954 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACAT 12013 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| || |||||||| ||||| ||||| || ||||| |||||| Sbjct 12014 TCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 12062 CCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 12121 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | |||||| || ||| |||| | ||| ||||||||| || Sbjct 12122 AAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGG 12181 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| |||| | |||||| | | | || || || || | Sbjct 12182 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCAT 12241 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| ||||||||||| || || ||||| ||||||||||||||| Sbjct 12242 TCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||| || |||| ||| ||||| || |||||||||||| Sbjct 17030 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17089 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| |||||| | || || || || || || || Sbjct 17090 AAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGA 17149 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || | | |||||| ||||| | | | || || | | ||| Sbjct 17150 ATGCCCTCCTTATCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 17207 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| |||||||||||||||| ||||| |||||||| |||||| Sbjct 17208 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||| || |||| ||| ||||| || |||||||||||| Sbjct 17258 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17317 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||| |||||| | || || || ||||| || || Sbjct 17318 AAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 17377 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || | | |||||| ||||| | | | || || | | ||| Sbjct 17378 ATGCCCTCCTTATCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 17435 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| |||||||||||||||| ||||| |||||||| |||||| Sbjct 17436 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 >seq10184 Length=3342 Score = 102 bits (112), Expect = 7e-17 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 16751 TGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGC 16810 || |||||||||||||||| ||| ||||||||| ||||||||| || | ||||| Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 16811 CGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCA 16868 ||||| |||||| || | ||| || ||||| || || || |||||| | ||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCCA 905 Query 16869 CAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAA 16928 | |||||| | |||| |||| |||||| || || |||||||| || || || || | Sbjct 906 CCGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGA 965 Query 16929 TCTGCAT 16935 | ||||| Sbjct 966 TTTGCAT 972 >seq2067 Length=34267 Score = 102 bits (112), Expect = 7e-17 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 16751 TGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGC 16810 || |||||||||||||||| ||| ||||||||| ||||||||| || | || || Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 16811 CGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCA 16868 ||||| |||||| || | |||||| ||||| || || || |||||| | ||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCCA 29697 Query 16869 CAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAA 16928 | || ||| | |||| |||| |||||| || || ||||||||||| || || || | Sbjct 29698 CTGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGA 29757 Query 16929 TCTGCAT 16935 | ||||| Sbjct 29758 TTTGCAT 29764 >seq1539 Length=61058 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| || || || | ||||||||| |||||||| |||||| Sbjct 9573 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9514 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||||||||| || ||| | || || || || || || || Sbjct 9513 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9454 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || | | |||||| ||||| | | | || || | | ||| Sbjct 9453 ATGCCCTCCTTATCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 9396 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| |||||||||||||||| ||||| |||||||| |||||| Sbjct 9395 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| || || || | ||||||||| |||||||| |||||| Sbjct 9345 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9286 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||| |||||| | || || || || || || || Sbjct 9285 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9226 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || | || ||||| ||||| | | | || || | | ||| Sbjct 9225 ATGCCCTCCTTATCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 9168 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| ||||||||||||||||| ||||| || ||||| |||||| Sbjct 9167 CCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||| || |||| ||| ||||| || |||||||||||| Sbjct 9801 CCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 9742 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||| |||||| | || || || || || || || Sbjct 9741 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9682 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || | | |||||| ||||| | | | || || | | ||| Sbjct 9681 ATGCCCTCCTTATCAGTGATCTTTGCT--TTCACATTATCAATGGTATCACTGCTCTCGA 9624 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || ||||||||||||||||| ||||| || ||||| |||||| Sbjct 9623 CCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 >seq8832 Length=4481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 16751 TGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGC 16810 || |||||||||||||||| ||| | ||||||| ||||||||| || | || || Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 16811 CGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCA 16868 || || |||||| || | |||||| || || || || || |||||| | ||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGC--CTTCACGTTCTCCA 719 Query 16869 CAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAA 16928 | |||||| | |||| | |||| ||||| || || ||||||||||| || || || | Sbjct 720 CCGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGA 779 Query 16929 TCTGCAT 16935 | ||||| Sbjct 780 TTTGCAT 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404591707069750