Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3991 136 3e-27 seq2970 134 1e-26 seq1539 127 2e-24 seq10184 104 2e-17 seq8832 91.5 1e-13 seq2067 91.5 1e-13 >seq3991 Length=17808 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||||||||| ||| |||| || | || || ||| Sbjct 17257 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17198 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| ||| |||||||| || || || |||||| |||| || Sbjct 17197 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 17138 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || |||||||| ||||||| || ||| ||| ||| ||||| Sbjct 17137 GCAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGACTACAA 17078 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||| |||| || ||||| || | | || || ||||||| Sbjct 17077 TATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCGCCTCAGGGGAGGAA 17028 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||||||||| ||| |||| || | || || ||| Sbjct 17485 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17426 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| ||| |||||||| || || || || || |||| || Sbjct 17425 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATCA 17366 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| ||||||||| |||||| ||| ||| ||||| Sbjct 17365 ACAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACAA 17306 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||| |||| || ||||| || | | || || ||||||| Sbjct 17305 TATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCGCCTCAGGGGAGGAA 17256 >seq2970 Length=24236 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||||||||| ||| |||| || | || || ||| | Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 25058 TGACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || || | | |||| ||| ||||||||||| ||||| ||||| |||| | Sbjct 7932 TGACACAATTGATAATATTAAAGC-AAAGATCACTGACAAGGAAGGTATTCCGACTGATC 7990 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || |||||| | ||||||| || ||| ||| |||||||| Sbjct 7991 AACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACA 8050 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| || | || || || || || | | || || ||||||| Sbjct 8051 ACATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCGCCTCAGGGGAGGAA 8101 Score = 129 bits (142), Expect = 5e-25 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAA-GTGGA-GTCG 25055 |||||| || ||||| || || ||||||| ||| |||| || | ||| ||| | || Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGT-- 14097 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||| | || ||||| ||||||| ||||| || || || ||||| || Sbjct 14098 TCGGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGAT 14157 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || ||| | |||||||| || |||||||| ||||||| |||||| ||| ||| ||| Sbjct 14158 CAGCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTAC 14217 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || || || || || || | || || ||||||| Sbjct 14218 AACATCCAAAAAGAATCAACCCTCCACTTGGTTCTGCGCCTCAGGGGAGGAA 14269 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||||||||| ||| |||| || | || || ||| Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| ||| ||||||||||| || || || || |||| || Sbjct 7704 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 7763 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| | ||||||| |||||| | | ||||||||| Sbjct 7764 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACAA 7823 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || |||||||| | || || ||||| || | | || || ||||||| Sbjct 7824 CATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCGCCTCAGGGGAGGAA 7873 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||||||||| ||| |||| || | || || ||| Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| ||| ||||||||||| || || || || |||| || Sbjct 8160 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 8219 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| | ||||||| || ||| ||| ||||||||| Sbjct 8220 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8279 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || | || || || || || | | || || ||||||| Sbjct 8280 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCGCCTCAGGGGAGGAA 8329 >seq1539 Length=61058 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||||||||| ||| |||| || | || || ||| Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || |||| ||| |||||||| || || || |||||| |||| || Sbjct 9406 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9465 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || |||||||| ||||||| |||||| ||| ||||||||| Sbjct 9466 GCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAA 9525 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || | || || || || || | | || || ||||||| Sbjct 9526 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCGCCTCAGGGGAGGAA 9575 >seq10184 Length=3342 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| | || ||||||||| Sbjct 972 ATGCAAATCTTCGTGAAGACACTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 913 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | ||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 912 GACACGGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 853 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || |||||||||||| | || || | ||||| ||| ||| ||||| Sbjct 852 CAGCGACTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACAAC 793 Query 25179 ATTCA 25183 ||||| Sbjct 792 ATTCA 788 >seq8832 Length=4481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | |||||| | || |||||||| Sbjct 786 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACACTGGACATGGAGTCGAAC 727 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | ||| ||||| || ||| || || || || || || || ||||| Sbjct 726 GACACGGTGGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAG 667 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || |||||||||||| | || |||| ||||| ||| ||| ||||| Sbjct 666 CAACGACTCATCTTCGCCGGCAAACAACTGGAGGATGGACGCACCCTGGCCGACTACAAC 607 Query 25179 ATTCA 25183 ||||| Sbjct 606 ATTCA 602 >seq2067 Length=34267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| | || ||||||||| Sbjct 29764 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 29705 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || | ||| ||||| || ||| ||||| || || || || || ||||| Sbjct 29704 GATACAGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 29645 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||||||| | || || | ||||| ||| ||| ||||| Sbjct 29644 CAGCGACTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACAAC 29585 Query 25179 ATTCA 25183 ||||| Sbjct 29584 ATTCA 29580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432797108877875