Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8845 93.3 5e-14 seq51152 87.8 2e-12 >seq8845 Length=2813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 ||||||||||| || || | |||||| |||||||||||||| ||||||||||| | |||| Sbjct 1719 GAATACATTTCCGAGTGAATATTCTCAATTGCAATTTGGAACCCGTAGAAACAGCGAGCT 1660 Query 93443 TCCGTGATCTGCACTTCTTGAGAAAA 93468 || | ||||| |||||||| | ||| Sbjct 1659 TCAGGTATCTGGACTTCTTGGGCAAA 1634 >seq51152 Length=820 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 ||||||||||| || || | |||||| || ||||||||||| ||||||||||| | |||| Sbjct 363 GAATACATTTCCGAGTGAATATTCTCAATGGCAATTTGGAACCCGTAGAAACAGCGAGCT 422 Query 93443 TCCGTGATCTGCACTTCTTGAGAAAA 93468 || | ||||| |||||||| | ||| Sbjct 423 TCAGGTATCTGGACTTCTTGGGCAAA 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556161069601000