Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2970 150 2e-31 seq3991 136 3e-27 seq1539 136 3e-27 seq8832 95.1 1e-14 seq2067 95.1 1e-14 seq10184 91.5 1e-13 >seq2970 Length=24236 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||| | ||||| ||||| | || || ||| |||| | Sbjct 14269 ATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14328 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || ||| || | || |||||| || |||||||||||||| ||||| ||||| Sbjct 14329 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14388 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || ||| ||| || | ||||||||||| Sbjct 14389 CAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAAC 14448 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || |||||||| | | |||||| Sbjct 14449 ATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGGT 14496 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | ||||| ||||| | || || ||| |||| | Sbjct 14041 ATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14100 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || ||| || | || |||||| || |||||||||||||| ||||| ||||| Sbjct 14101 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14160 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| || || ||| |||||| | |||| |||||| Sbjct 14161 CAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAAC 14220 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||||||||| ||| | || || ||| |||| Sbjct 14221 ATCCAAAAAGAATCAACCCTCCACTTGGTTCTGCG 14255 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| ||||| ||||| | || | || || || | || Sbjct 7645 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 7704 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || ||||||||||| || || | |||||| Sbjct 7705 GATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCAA 7764 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| | || ||| |||||| | ||||||||||| Sbjct 7765 CAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACAAC 7824 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || |||||||| | ||| | ||||| |||||||| Sbjct 7825 ATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCG 7859 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| ||||| ||||| | || || || || || | || Sbjct 7873 ATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTACT 7932 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || |||| ||| ||| || |||||||| |||||||| | |||||| Sbjct 7933 GACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCAA 7992 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| | || ||| ||| || | ||||||||||| Sbjct 7993 CAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAAC 8052 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || | ||| | || || |||||||| Sbjct 8053 ATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| ||||| ||||| | || | || || || | || Sbjct 8101 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 8160 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || ||||||||||| || || | |||||| Sbjct 8161 GATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCAA 8220 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| | || ||| ||| || | ||||||||||| Sbjct 8221 CAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAAC 8280 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || | ||| | || || |||||||| Sbjct 8281 ATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 >seq3991 Length=17808 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| ||||| ||||| | || | || || || | || Sbjct 17256 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 17197 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || || |||||||| |||||| | ||||| Sbjct 17196 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCAG 17137 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| || || ||| ||| || | |||| ||||| Sbjct 17136 CAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGACTACAAT 17077 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || |||||||| ||||| | ||||| |||||||| Sbjct 17076 ATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17042 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| ||||| ||||| | || | || || || | || Sbjct 17484 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 17425 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || || |||||||| || || | |||||| Sbjct 17424 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATCAA 17365 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| |||| ||| |||||| | |||| ||||| Sbjct 17364 CAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACAAT 17305 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || |||||||| ||||| | ||||| |||||||| Sbjct 17304 ATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17270 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG-GAAACCAC 22277 ||||| |||||||| ||||| |||| || ||||| | || |||| | || |||| | Sbjct 12288 ATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAAC-CTTGGAATGCGAAAGTTC 12230 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||||| ||| || | || ||||| || |||||||||||||| ||||| || || Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCA 12170 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||| | || ||||| || ||||| | |||||| || || | |||||||||| Sbjct 12169 ACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAA 12110 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| ||||| || || ||| | ||||| || ||||| Sbjct 12109 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 12074 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||| | || || ||||| | || || ||| |||| | Sbjct 12060 ATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTCT 12001 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || ||| || | || ||||| || |||||||||||||| || || || || Sbjct 12000 GATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 11941 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| || || ||| ||| || | ||||||||||| Sbjct 11940 CAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAAC 11881 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || ||| |||| | | |||||| Sbjct 11880 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTGCGCCTCAGGGGAGGT 11833 >seq1539 Length=61058 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| ||||| ||||| | || | || || || | || Sbjct 9347 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 9406 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || || |||||||| |||||| | ||||| Sbjct 9407 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCAG 9466 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| || || ||| |||||| | ||||||||||| Sbjct 9467 CAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAAC 9526 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || | ||| | || || |||||||| Sbjct 9527 ATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9561 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | ||||| ||||| | ||||| || || || | || Sbjct 9575 ATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACTCTGGAGGTCGAGAGCAGT 9634 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || || |||||||| |||||| | ||||| Sbjct 9635 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCAG 9694 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| | || ||| |||||| | |||| ||||| Sbjct 9695 CAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGACTACAAT 9754 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || |||||||| ||||| | ||||| || ||||| Sbjct 9755 ATCCAAAAAGAGGCCACCCTTCATTTGGTGTTGCG 9789 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | ||||| ||||| | || || || || || | || Sbjct 9119 ATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAGGTCGAGAGCAGT 9178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || || |||||||| |||||| | ||||| Sbjct 9179 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCAG 9238 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || ||||| | || ||| |||||| | ||||||||||| Sbjct 9239 CAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGATTACAAC 9298 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || | ||| | || || |||||||| Sbjct 9299 ATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9333 >seq8832 Length=4481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| || || |||| | | | Sbjct 786 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACACTGGACATGGAGTCGAAC 727 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || ||||| | | || || || || || |||||||| || || || || || Sbjct 726 GACACGGTGGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAG 667 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || ||||||||||| | |||||| |||||| | |||| |||||| Sbjct 666 CAACGACTCATCTTCGCCGGCAAACAACTGGAGGATGGACGCACCCTGGCCGACTACAAC 607 Query 22399 ATTCA 22403 ||||| Sbjct 606 ATTCA 602 >seq2067 Length=34267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| | || ||||| | | | Sbjct 29764 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 29705 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| ||||| | | || || || || ||||||||||| || || || || || Sbjct 29704 GATACAGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 29645 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||||||||| | ||||| |||||| | |||| |||||| Sbjct 29644 CAGCGACTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACAAC 29585 Query 22399 ATTCA 22403 ||||| Sbjct 29584 ATTCA 29580 >seq10184 Length=3342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| | || ||||| | | | Sbjct 972 ATGCAAATCTTCGTGAAGACACTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 913 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || ||||| | | || || || || |||||||| || || || || || || Sbjct 912 GACACGGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 853 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||||||||| | ||||| |||||| | |||| |||||| Sbjct 852 CAGCGACTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACAAC 793 Query 22399 ATTCA 22403 ||||| Sbjct 792 ATTCA 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419213770896625