Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq288 109 1e-18 seq307 107 4e-18 seq58792 104 5e-17 seq46781 104 5e-17 seq31269 104 5e-17 seq18022 104 5e-17 seq15142 104 5e-17 seq11223 104 5e-17 seq11036 104 5e-17 seq3129 104 5e-17 seq2836 104 5e-17 seq2467 104 5e-17 seq2301 104 5e-17 seq1063 104 5e-17 seq943 104 5e-17 seq636 104 5e-17 seq635 104 5e-17 seq357 104 5e-17 seq25 104 5e-17 seq11 104 5e-17 seq68458 100 6e-16 seq66911 100 6e-16 seq3756 91.5 3e-13 >seq288 Length=72001 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||| Sbjct 20446 ATAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCG 20387 Query 142561 AGCCCCACATCGGGC 142575 |||||| |||||||| Sbjct 20386 AGCCCCGCATCGGGC 20372 >seq307 Length=85398 Score = 107 bits (118), Expect = 4e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| ||||||||||||||||||||||||| | ||||||||||||| || |||| ||||| Sbjct 82859 AGATCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTT 82918 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||| |||||||| Sbjct 82919 CGAGCCCCGCATCGGGC 82935 >seq58792 Length=746 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 401 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 342 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 341 CCCGCATCGGGC 330 >seq46781 Length=874 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 299 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 358 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 359 CCCGCATCGGGC 370 >seq31269 Length=1145 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 567 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 508 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 507 CCCGCATCGGGC 496 >seq18022 Length=1736 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 1723 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1664 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 1663 CCCGCATCGGGCTGA 1649 >seq15142 Length=2093 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 29 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 88 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 89 CCCGCATCGGGC 100 >seq11223 Length=3321 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 1051 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1110 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 1111 CCCGCATCGGGCTGA 1125 >seq11036 Length=3425 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||| Sbjct 2095 ATAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCG 2036 Query 142561 AGCCCCACATCGGGC 142575 | |||| |||||||| Sbjct 2035 AACCCCGCATCGGGC 2021 >seq3129 Length=20334 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 16814 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 16755 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 16754 CCCGCATCGGGC 16743 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 20306 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 20247 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 20246 CCCGCATCGGGC 20235 >seq2836 Length=24122 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 426 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 367 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 366 CCCGCATCGGGC 355 >seq2467 Length=46241 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 18980 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 18921 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 18920 CCCGCATCGGGCTGA 18906 >seq2301 Length=20342 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 11267 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11208 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 11207 CCCGCATCGGGC 11196 >seq1063 Length=46782 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 39865 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 39806 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 39805 CCCGCATCGGGCTGA 39791 >seq943 Length=49218 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 12325 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 12266 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 12265 CCCGCATCGGGC 12254 >seq636 Length=73428 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 48472 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 48413 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 48412 CCCGCATCGGGC 48401 >seq635 Length=56764 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 31428 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 31369 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 31368 CCCGCATCGGGCTGA 31354 >seq357 Length=96098 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 67912 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 67971 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 67972 CCCGCATCGGGCTGA 67986 >seq25 Length=201306 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 77129 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 77070 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 77069 CCCGCATCGGGCTGA 77055 >seq11 Length=238767 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 117092 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 117033 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 117032 CCCGCATCGGGC 117021 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 120212 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 120153 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 120152 CCCGCATCGGGC 120141 >seq68458 Length=668 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 ||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||||| Sbjct 568 CCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCC 509 Query 142566 CACATCGGGCAGA 142578 | |||||||| || Sbjct 508 CGCATCGGGCTGA 496 >seq66911 Length=679 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 ||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||||| Sbjct 74 CCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCC 15 Query 142566 CACATCGGGCAGA 142578 | |||||||| || Sbjct 14 CGCATCGGGCTGA 2 >seq3756 Length=16100 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 63 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 4 Query 142564 CCC 142566 ||| Sbjct 3 CCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026512970291525