Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2970 127 2e-24 seq1539 118 9e-22 seq10184 105 6e-18 seq3991 100 2e-16 seq2067 100 2e-16 seq8832 96.9 3e-15 seq6138 96.9 3e-15 seq27157 87.8 2e-12 seq2297 84.2 2e-11 >seq2970 Length=24236 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| ||||| | || | |||||||| |||||||||||| | ||| || ||| Sbjct 7857 CAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATC 7798 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| |||||||| || || |||| || || ||||| || | || ||||| || ||||| Sbjct 7797 TTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTC 7738 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 | |||||| ||| | | |||| ||| || || ||||| |||| ||| | || Sbjct 7737 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 7678 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||||| |||||| |||||||| ||||| Sbjct 7677 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| || || | || | || ||||| |||||||||||| || ||| || ||| Sbjct 8085 CAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATC 8026 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| |||||||| || || |||| || || ||||| || | ||||| ||||| ||||| Sbjct 8025 TTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTC 7966 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 | |||||| ||| | | |||| ||||| || ||||| |||| ||| | || Sbjct 7965 AGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGT 7906 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||||| |||||| |||||||| ||||| Sbjct 7905 TTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| || || | || | || ||||| |||||||||||| || ||| || ||| Sbjct 8313 CAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATC 8254 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| |||||||| || || |||| || || ||||| || | || ||||| || ||||| Sbjct 8253 TTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTC 8194 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 | |||||| ||| | | |||| ||| || || ||||| |||| ||| | || Sbjct 8193 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 8134 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||||| |||||| |||||||| ||||| Sbjct 8133 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| || || | || || || ||||| |||||||||||| || |||||| ||| Sbjct 14481 CAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATC 14422 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | |||||| || || |||| | ||| || || ||||| || || || || ||||| Sbjct 14421 TTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTC 14362 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 || ||| || | | || || || || | ||| |||| ||| | || Sbjct 14361 CTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGT 14302 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||||||||||||| || ||||| ||||| Sbjct 14301 TTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| || || | || ||||||||||| |||||||| ||| || ||| || ||| Sbjct 14253 CAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATC 14194 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | |||||| || || | || || || || || ||||| || || || || ||||| Sbjct 14193 TTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTC 14134 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 || ||| || | | || || || || | ||| |||| ||| | || Sbjct 14133 CTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGT 14074 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||||||| ||||| |||||||||||||| Sbjct 14073 TTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq1539 Length=61058 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| || || | || | || ||||| |||||||||||| || ||| || ||| Sbjct 9331 CAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATC 9272 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| |||||||| || || ||||||| || || || || | |||||||| || || || Sbjct 9271 TTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATC 9212 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 | |||||| ||| | | |||| ||| || || ||||| |||| ||| | || Sbjct 9211 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGT 9152 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||||||| ||||| || ||||| ||||| Sbjct 9151 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| || || | || | || ||||| |||||||||||| || ||| || ||| Sbjct 9559 CAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATC 9500 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | |||||| || || ||||||| || || || || | |||||||| || || || Sbjct 9499 TTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATC 9440 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 | |||||| ||| | | |||| ||| || || ||||| |||| ||| | || Sbjct 9439 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 9380 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||||| |||||| |||||||| ||||| Sbjct 9379 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq10184 Length=3342 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114198 TGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGA 114257 ||||||||||| ||| || || || || || |||||||| || ||| |||| || Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 114258 CGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACG 114317 ||||| |||||||| || |||||||| ||||| ||||| || | | || || Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 114318 GTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 114377 |||||| | || || || |||| ||| | ||| || |||||||| || || || || || Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 114378 TGCATGGC 114385 |||||||| Sbjct 968 TGCATGGC 975 >seq3991 Length=17808 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || ||||| | || || || ||||| |||||||||||| || ||||||| ||| Sbjct 12076 CAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATC 12135 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || |||||||| || || | || | || ||||||||||| || || || || ||||| Sbjct 12136 CTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTC 12195 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 || || || | | || ||||| || | |||| |||| ||| | || Sbjct 12196 CTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGT 12255 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || || ||||| |||||||||||||| Sbjct 12256 TTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2067 Length=34267 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114198 TGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGA 114257 ||||||||||| ||| || || || || || |||||||| || ||| ||||||| Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 114258 CGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACG 114317 ||||| |||||||| || ||||| || ||||| ||||| || | | || || Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 114318 GTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 114377 || ||| | || || || |||| ||| | ||| || |||||||| || || || || || Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 114378 TGCATGGC 114385 |||||||| Sbjct 29760 TGCATGGC 29767 >seq8832 Length=4481 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114198 TGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGA 114257 ||||||||||| ||| || || || ||| || |||||||| || ||| ||||||| Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 114258 CGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACG 114317 || || |||||||| || ||||| || || || ||||| || | | || || Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 114318 GTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 114377 |||||| | || || | ||||| || | ||| || |||||||| || || || || || Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 114378 TGCATGGC 114385 |||||||| Sbjct 782 TGCATGGC 789 >seq6138 Length=12267 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || |||||||| ||||| || |||||||||||||| ||||| || | | ||| Sbjct 8469 AGGCGCTGTTGATCCGGCGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCA 8528 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||||| ||| ||||| |||| || | |||||||| ||||||||||| || ||| Sbjct 8529 ATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTTTTGCCTGTCAGAGTTTTGACGAAA 8588 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 8589 ATCTGCAT 8596 >seq27157 Length=1261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 ||||| || || ||||||||||||||||| ||||| |||||| || | | |||| Sbjct 879 AGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCA 820 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||| ||| || || |||| ||| | || |||||||| ||||| || ||||| Sbjct 819 ATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAG 760 Query 114375 ATCTGCATGGC 114385 || ||||| || Sbjct 759 ATTTGCATAGC 749 >seq2297 Length=32998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 114257 ACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAAC 114316 ||| || || ||||||||||||||||| ||||| |||||| || | | ||||| Sbjct 3040 ACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAAT 2981 Query 114317 GGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 114376 |||||| ||| || || |||| ||| | || |||||||| ||||| || ||||| || Sbjct 2980 CGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGAT 2921 Query 114377 CTGCATGGC 114385 ||||| || Sbjct 2920 TTGCATAGC 2912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419619672996300