Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5492 89.7 1e-12 seq12421 86.0 1e-11 seq2518 86.0 1e-11 seq615 86.0 1e-11 >seq5492 Length=8422 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 244100 TGAAACTCTCCCGACAGCACGCGGC-GCTGGTAGAGGTT-GCTGCTGAGCGGCTCGATGC 244157 || || || || ||||||||||| | |||| |||| ||| | || || ||||||| | Sbjct 6733 TGGAAGTCGCCGGACAGCACGCGTCTGCTG-TAGATGTTTGATG-TGTATGGCTCGAAGG 6676 Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217 ||| ||||||| || || || |||||| ||| |||||||| |||| |||||||||| Sbjct 6675 ACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCATCGGCGCGACCAGCAGAC 6616 Query 244218 TGTTCCTCACGCCGTGC 244234 |||| | ||| |||||| Sbjct 6615 TGTTGCGCACTCCGTGC 6599 >seq12421 Length=2797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 244100 TGAAACTCTCCCGACAGCACGCGGC-GCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCT 244158 || || || || ||||||||||| | ||| ||||| |||| || ||||| | | Sbjct 133 TGGAAGTCGCCAGACAGCACGCGTCTGCT-GTAGATGTTGGATGTGTATGGCTCAAAGGA 191 Query 244159 CTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACT 244218 ||| ||||||| || || || |||||| ||| |||||||| |||| ||||||||||| Sbjct 192 CTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCATCGGCGCAACCAGCAGACT 251 Query 244219 GTTCCTCACGCCGTGC 244234 ||| | ||| |||||| Sbjct 252 GTTGCGCACCCCGTGC 267 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| || ||||| ||||| ||||| |||||||||||| || |||| ||| || || Sbjct 1242 GTACTCGATGATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTT 1301 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 |||||| |||||| ||||||||||| | ||| | || ||||||||| Sbjct 1302 CGACTTGCGGTTGCACGCGTCCTTGTACACCATATATGGGGTGCCGGTCTCG 1353 >seq2518 Length=16751 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| || ||||||||||| ||||| |||||||||||| || || | ||| || || Sbjct 10602 GTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTT 10661 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 |||||| |||||| ||||||||||| | |||| | || ||||| ||| Sbjct 10662 CGACTTGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTCG 10713 >seq615 Length=100005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936 ||| || ||||| |||||| || ||| || ||||| || |||| ||| ||||| ||| Sbjct 5299 GTTCAGCGACTGACTCTGGCAGATGAACGGAGCCCGGTCGGCGGACATTTGGATGACGTC 5358 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTC 243996 |||||| || ||||| || |||||||||| | ||| | | | || ||| | | Sbjct 5359 CTTCTGCGAGATCTCCCACACCGTCTTGTACAGCTCCTTAATCTCAGCCGGCAAC--TGC 5416 Query 243997 G--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054 | |||||||||||||| || || | |||| ||| || | ||| | ||| |||||| Sbjct 5417 GTAATGTTCTGCACCGATCCGTTCTCCGCGATCAGCCGGTTCTTCATCTGATCATTCCAC 5476 Query 244055 AGG 244057 ||| Sbjct 5477 AGG 5479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943152578774000