Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3991 127 2e-24 seq2970 123 2e-23 seq1539 105 5e-18 >seq3991 Length=17808 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || || ||||| |||| || || || |||||| || ||||||||||| || Sbjct 11833 ACCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGC 11892 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| ||| | || |||||||| || || ||||| |||||||| ||||| ||| ||| Sbjct 11893 CAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGG 11952 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| |||||| ||||| ||| || | || ||| |||||| | ||| Sbjct 11953 GATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTG-TCT-ACAGTATCAGAACTTTCA 12010 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| | ||||| |||||||| || || ||||| || || ||||||||| Sbjct 12011 CATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| ||||| ||| || || |||||| || ||||||||||| ||| Sbjct 12062 CCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 12121 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||| || || ||||| |||| || || || ||| || Sbjct 12122 AAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGG 12181 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAA--TGGAACTCACACTATCAGTAGATTCGC 34078 | | ||| |||||| ||||| ||| | | | || || |||||| | ||||| Sbjct 12182 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGT-CT-ACGGTATCAGAACTTTCGC 12239 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| | ||||| |||||||| ||||| ||||||||||| || |||||| Sbjct 12240 ATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Score = 105 bits (116), Expect = 5e-18 Identities = 166/237 (70%), Gaps = 18/237 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| |||||| ||| ||| || || || ||||| || ||| Sbjct 17030 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17089 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||||||| || || ||||| |||||||| |||||||| || Sbjct 17090 AAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGA 17149 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| || || | || ||| |||| ||||| ||||| | | || | Sbjct 17150 ATGCCCTCCTTATCAGTGATCTTT-GCTT--------TCACATTATCAATGGTATCACTG 17200 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| | ||||||||||| ||||||||| Sbjct 17201 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 18/237 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| |||||| ||| ||| || || || ||||| || ||| Sbjct 17258 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17317 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||| || || ||||| |||||||| || ||||| ||| Sbjct 17318 AAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 17377 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| || || | || ||| |||| ||||| ||||| | | || | Sbjct 17378 ATGCCCTCCTTATCAGTGATCTTT-GCTT--------TCACATTATCAATGGTATCACTG 17428 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| | ||||||||||| ||||||||| Sbjct 17429 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 >seq2970 Length=24236 Score = 123 bits (136), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||| || |||| |||| || || || |||||| || ||||||||||| || Sbjct 14496 ACCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGC 14437 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || |||||||| || || ||||| |||| || ||||||||| || Sbjct 14436 CAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGG 14377 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| |||||| |||||| ||| || | || ||| |||| | | ||| Sbjct 14376 GATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTG-TCT-ACAGTATCCGAACTTTCA 14319 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| | ||||| ||||||||||| || |||||||| || ||||||||| Sbjct 14318 CATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 Score = 113 bits (124), Expect = 4e-20 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||| |||| || || || || || || |||||||| || ||| Sbjct 14267 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCC 14208 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||||||| || || ||||| ||||| || ||||||||| || Sbjct 14207 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGG 14148 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAA--TGGAACTCACACTATCAGTAGATTCGC 34078 | | ||| |||||| |||||| ||| | | | || ||| |||| | | ||| | Sbjct 14147 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGT-CT-ACAGTATCCGAACTTTCAC 14090 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| | ||||| ||||||||||| || ||||||||||| || |||||| Sbjct 14089 ATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 111 bits (122), Expect = 1e-19 Identities = 167/237 (70%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| ||||| || |||||| || ||||||||||| ||| Sbjct 8327 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8268 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || || | ||| || || ||||| |||||||| || ||||| ||| Sbjct 8267 AAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 8208 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| ||||| | | | ||||||| ||||| ||||| | | || | Sbjct 8207 ATGCCCTCCTTGTCAGTGA-TCTTTGCTT--------TCACATTATCAATGGTATCACTG 8157 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| | ||||||||||| ||||||||| Sbjct 8156 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 102 bits (112), Expect = 6e-17 Identities = 165/237 (70%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| |||||| || ||| || || ||||||||||| || Sbjct 7871 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCT 7812 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||| || || ||||| |||||||| || ||||| ||| Sbjct 7811 AAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 7752 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| ||||| | | | ||||||| ||||| ||||| | | || | Sbjct 7751 ATGCCCTCCTTGTCAGTGA-TCTTTGCTT--------TCACATTATCAATGGTATCACTG 7701 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| | ||||||||||| ||||||||| Sbjct 7700 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| || || || |||||| || ||||||||||| ||| Sbjct 8099 CCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8040 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || || | ||| || || ||||| |||||||| || ||||| ||| Sbjct 8039 AAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGA 7980 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | || ||||| | || ||| ||||| | | | |||||| ||| Sbjct 7979 ATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACC 7920 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | ||||| ||||| ||||| | ||||||||||| ||||||||| Sbjct 7919 TCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCATT 7872 >seq1539 Length=61058 Score = 105 bits (116), Expect = 5e-18 Identities = 166/237 (70%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| ||||| || |||||| || ||||||||||| ||| Sbjct 9573 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9514 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||||||| || || ||||| || ||||| |||||||| || Sbjct 9513 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9454 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| || || | | | ||||||| ||||| ||||| | | || | Sbjct 9453 ATGCCCTCCTTATCAGTGA-TCTTTGCTT--------TCACATTATCAATGGTATCACTG 9403 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| | ||||||||||| ||||||||| Sbjct 9402 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| |||| ||||| || |||||| || ||||||||||| ||| Sbjct 9345 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9286 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||| || || ||||| || ||||| |||||||| || Sbjct 9285 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9226 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| || || | | | ||||||| ||||| ||||| | | || | Sbjct 9225 ATGCCCTCCTTATCAGTGA-TCTTTGCTT--------TCACATTATCAATGGTATCACTG 9175 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| || |||||||| || ||||||||| Sbjct 9174 CTCTCGACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||| ||||| |||||| ||| ||| || || || ||||| || ||| Sbjct 9801 CCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 9742 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||| || || ||||| || ||||| |||||||| || Sbjct 9741 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9682 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| || || | || ||| |||| ||||| ||||| | | || | Sbjct 9681 ATGCCCTCCTTATCAGTGATCTTT-GCTT--------TCACATTATCAATGGTATCACTG 9631 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||||| ||||| ||||||||||| || |||||||| || ||||||||| Sbjct 9630 CTCTCGACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396575939621050