Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10184 140 8e-28 seq2067 140 8e-28 seq2970 134 3e-26 seq8832 131 4e-25 seq1539 122 2e-22 seq3991 118 2e-21 seq9051 102 2e-16 seq6138 102 2e-16 seq22 96.9 8e-15 >seq10184 Length=3342 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || || || |||||||| || ||||||||||| || | |||||| || |||||||| || Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 ||||| || ||||| ||||| || |||||||| || || |||||||| || | Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||| |||| || || || | |||||||||||||||||||| ||||| ||||| || Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 288469 TGCAT 288473 ||||| Sbjct 968 TGCAT 972 >seq2067 Length=34267 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || || || |||||||| || ||||||||||| || | |||||| || |||||||| || Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 ||||| || ||||| || || || |||||||| || || |||||||| || | Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | |||| |||| || || || | |||||||||||||||||||| ||||| ||||| || Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 288469 TGCAT 288473 ||||| Sbjct 29760 TGCAT 29764 >seq2970 Length=24236 Score = 134 bits (148), Expect = 3e-26 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || |||||||| | ||||| || ||||| |||||||||||||| || Sbjct 14232 TTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAA 14173 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || ||| |||||| || || || ||||||||||| || ||||| || Sbjct 14172 AATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATT 14113 Query 288402 TTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||| || ||| ||| ||| ||| || || || || || |||||||| || || Sbjct 14112 GTCTACAGTATC---CGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTT 14056 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 14055 CACAAAAATCTGCATT 14040 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || ||||| | || || || ||||| |||||||||||||| ||| Sbjct 14459 TCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAG 14400 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || ||| |||||| || || || ||||||||||| || ||||| || Sbjct 14399 ATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTG 14340 Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 |||| || ||| ||| ||| ||| || || || || || ||||||||||| || Sbjct 14339 TCTACAGTATC---CGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTC 14283 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 14282 ACGAAAATTTGCATT 14268 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || ||||| | ||||| || ||||| | |||||| || || ||| Sbjct 7835 TCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAG 7776 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || |||||| | || || || || || || ||| || |||||||| || Sbjct 7775 ATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTA 7716 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || | || || || || ||||||| ||| || || Sbjct 7715 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 7656 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 7655 AAAATTTGCATT 7644 >seq8832 Length=4481 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || || || |||||||| || |||||||| || || | |||||| || |||||||| || Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || ||||||||||| || || |||||||| || | Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||| |||| || | || || |||||||||||||||||||| ||||| ||||| || Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 288469 TGCAT 288473 ||||| Sbjct 782 TGCAT 786 >seq1539 Length=61058 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| |||||||||||||| |||||||| | ||||| || ||||| | ||| Sbjct 9778 ATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTG 9719 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 |||||| || ||||| || || || ||| | ||| || || || ||||| ||| || Sbjct 9718 TTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 9659 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 |||||||| || || || | ||| || || || || || || || || || ||||| Sbjct 9658 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGTTTTTCCGGT 9599 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 ||| || || ||||| || |||||| Sbjct 9598 CAGGGTTTTCACGAAAATTTGCATT 9574 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || ||||| | ||||| || ||||| |||||||||||||| ||| Sbjct 9537 TCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAG 9478 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || || || ||| | ||| || || || ||||| ||| || |||||||| || Sbjct 9477 ATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 9418 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || | || || || || ||||||| ||| || || Sbjct 9417 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 9358 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 9357 AAAATTTGCATT 9346 >seq3991 Length=17808 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| |||||||||||||| |||||||| | ||||| || ||||||| ||| Sbjct 17281 ATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCTAGTTG 17340 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || || |||||||| || |||||| | || || || || ||||| ||| || Sbjct 17341 TTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCAGTGATCTT 17400 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 |||||||| || || || | ||| || || || || | || || || || ||||| Sbjct 17401 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGT 17460 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 || ||| || || || || |||||| Sbjct 17461 CAAAGTTTTCACAAAAATTTGCATT 17485 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || ||||| | || || || ||||| |||||||||||||| || Sbjct 11870 TCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAA 11929 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || || || ||||| || || || |||||||||||||| ||||| || Sbjct 11930 ATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTG 11989 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 |||| || ||| ||| ||| || || || || || || |||||||| || ||| Sbjct 11990 TCTACAGTATCAGAACTTTCACATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACG 12049 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 12050 AAAATTTGCATT 12061 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| |||||||||||||| |||||||| | || || || ||||| ||||| Sbjct 17053 ATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTG 17112 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || || |||||||| || || ||| | ||| || || || ||||| ||| || Sbjct 17113 TTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 17172 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 |||||||| || || || | ||| || || || || | || || || || ||||| Sbjct 17173 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGT 17232 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 || ||| || || || || |||||| Sbjct 17233 CAAAGTTTTCACAAAAATTTGCATT 17257 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || ||||| | || || || || || | |||||||||||| || Sbjct 12098 TCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAA 12157 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || ||||| |||||| || || || |||||||||||||| ||||| || Sbjct 12158 ATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTG 12217 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 |||| | ||| ||| ||| | || || || || || || || || || || Sbjct 12218 TCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACA 12277 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 12278 AAAATCTGCATT 12289 >seq9051 Length=5414 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||| |||||||| || ||||| || || || || | ||||| | || Sbjct 4379 GGGATGCCCTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTAGCCTCG 4438 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| || ||||||||||||||||| ||||||||| Sbjct 4439 ACTTCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATT 4489 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| ||||| || || || || || || || | || || | || Sbjct 3803 GGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGCCTCG 3862 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 3863 ACCTCCAGAGTGATCGTCTTGCCGGTCAGTGTCTTGACGAAAATCTGCATT 3913 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || || || || || || |||||||| || | || || | || Sbjct 4653 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCACTTGCCTCG 4712 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || ||||| ||||| || || ||||| |||||||| || ||||| ||| Sbjct 4713 ACTTCAAGAGTGATGGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCATGATG 4766 >seq6138 Length=12267 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| |||||||| |||||||| || || || || || || || | ||||| | || Sbjct 8944 GGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTAGCCTCG 9003 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||||||| |||||||||||| ||||||||| Sbjct 9004 ACCTCCAGAGTGATGGTCTTCCCGGTCAAAGTCTTGACGAAGATCTGCATT 9054 >seq22 Length=212208 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || |||||||| || || || ||||| || || | || || | ||| Sbjct 70628 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGCTTCG 70687 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 70688 ACCTCCAGGGTGATGGTCTTCCCGGTGAGTGTCTTCACGAAGATCTGCATT 70738 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || |||||||| || || || ||||| || || | || || | ||| Sbjct 71420 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGCTTCG 71479 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 71480 ACCTCCAGGGTGATGGTCTTCCCGGTGAGTGTCTTCACGAAGATCTGCATT 71530 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || || || ||||| || || | || || | ||| Sbjct 71700 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGCTTCG 71759 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 71760 ACCTCCAGGGTGATGGTCTTCCCGGTGAGTGTCTTCACGAAGATCTGCATT 71810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178135032780950