Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq52 100 3e-16 seq12421 82.4 9e-11 >seq52 Length=196430 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 11020 || || ||||| ||||| |||||||| | ||| || || |||| || || | || Sbjct 168138 CCCACCGCGTCGATTTCGTCGATGAACAAGATGCAAGGGGCCTTTTTGCGCGCCATCTCG 168079 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || || || ||||| | | | ||| || |||||||||||||||| ||| | || | || Sbjct 168078 AACATGTCCCGGACCCGACTCGGACCCACGCCCACAAACATTTCCAGAAACTCGGAGCCG 168019 Query 11081 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 11140 || | |||||| || || |||| || || ||| | ||| ||| | |||||||| Sbjct 168018 GAGACTGTGATGAATGGAACATTGGCCTCGCCAGCGGTCGCTTTGGCCAACAGGGTCTTT 167959 Query 11141 CCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGA 11180 || ||||| ||| || | ||||||||||| ||| || Sbjct 167958 CCAGTCCCGGGTGGGCCGGTCAGAAGGGCACCCTGTGCGA 167919 >seq12421 Length=2797 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||||||||||||||| |||| ||||| || | ||||||||| ||||| Sbjct 163 TAGATGTTGGATGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGAC 222 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 || || ||||| || || | || || ||||| || Sbjct 223 GCGGTCGGCATCGGCGCAACCAGCAGACTGTTGCG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596602987867000