Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2067 127 2e-24 seq10184 122 9e-23 seq8832 113 5e-20 seq1539 100 3e-16 seq3991 89.7 6e-13 >seq2067 Length=34267 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 ||||| ||||| || ||||| || || |||| || || || || || ||||| |||||| Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 ||||||||||| | || | || |||||||||| ||| || || | || |||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 42203 || ||| |||| |||||||| | ||||| || || || || |||||||| || |||||| Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 42204 TGCAT 42208 ||||| Sbjct 29760 TGCAT 29764 >seq10184 Length=3342 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 ||||| ||||| || ||||| || || |||| || || || || || ||||| || ||| Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 ||||||||||| | || | || ||||||||| ||| || || | || ||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 42203 |||||| |||| |||||||| | ||||| || || || || || ||||| || |||||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 42204 TGCAT 42208 ||||| Sbjct 968 TGCAT 972 >seq8832 Length=4481 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 ||||| ||||| || ||||| || || | || || || || || || ||||| |||||| Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 || |||||||| | || | || |||||| ||| ||| || || | || ||||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 42203 |||||| |||| |||| || | ||||| || || || || |||||||| || |||||| Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 42204 TGCAT 42208 ||||| Sbjct 782 TGCAT 786 >seq1539 Length=61058 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||||||||||||| | ||| ||| ||||| |||||||| || ||| Sbjct 9801 CCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 9742 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || || || || || || || ||||| || ||||| || | ||| Sbjct 9741 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9682 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| || |||| ||| ||| | | | | || || || || || Sbjct 9681 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 9622 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || |||||||| || || || || || || || ||||||||| Sbjct 9621 TCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 >seq3991 Length=17808 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||||||||||||| | || ||||||||| || |||||||| ||| Sbjct 12062 CCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 12121 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || || || || || || || || | || || ||||| | ||| Sbjct 12122 AAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGG 12181 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC-GCTCGATTCCAC 42160 | | |||||||||| |||||| || | | | || || || | | || | | Sbjct 12182 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAAC--TTTCGC 12239 Query 42161 A-TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || |||||||| |||||||| || || ||||| || |||||| Sbjct 12240 ATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542530219166000