Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2518 107 2e-18 seq615 107 2e-18 seq5492 104 2e-17 seq12421 95.1 1e-14 >seq2518 Length=16751 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 || || || || || ||||| ||| ||||||| | |||| |||||| ||||||||| Sbjct 10712 GAAACCGGCACCCCGTACATGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAG 10653 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 | |||||| |||||| |||| || |||||||||||||| ||||||| |||| || Sbjct 10652 AATCTCGGGACCATCAAGTGCTCCAACCTGTGCACCGAGATCATCGAGTACTCTTCGCCC 10593 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 ||||| || ||||| ||| ||| |||||| Sbjct 10592 ACCGAGACCGCAGTGTGCAACTTGGCCTCCAT 10561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| ||||| ||| ||| ||||| || || || ||||| || || || ||||| || Sbjct 9701 CAAGCACGGAGTGCGCAACAGTCTGCTGGTCGCGCCGATGCCAACCGCGTCAACGGCCCA 9642 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||||| |||||||||||||| ||||| || | ||| |||||| | |||| ||| || || Sbjct 9641 AATCCTCGGCAACAACGAGTCCTTCGAGCCATACACATCCAACATCTACAGCAGACGCGT 9582 Query 95193 GCTCGCCGGGGAATTCC 95209 ||| |||| || |||| Sbjct 9581 GCTGTCCGGCGACTTCC 9565 >seq615 Length=100005 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCA 95074 |||||||| | || | | ||||| ||||||| || || | | || ||| | || Sbjct 5782 TGGGGTGTCACTCCGACCGATCTGTGGGACTGGGCGGCGCTGAAGGAGCGGAT--TGCCA 5725 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| ||| ||| ||||| ||||| || ||||| || || |||||||| || | Sbjct 5724 AGCACGGGGTGCGCAACAGTCTGCTGGTGGCGCCGATGCCGACCGCGTCCACGGCCCAAA 5665 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 |||| |||||||||||||| ||||| || | ||| || || | |||| |||||| |||| Sbjct 5664 TCCTCGGCAACAACGAGTCCTTCGAGCCATACACATCAAATATTTACAGCAGGCGCGTGC 5605 Query 95195 TCGCCGGGGAATTCC 95209 | |||| || |||| Sbjct 5604 TATCCGGCGACTTCC 5590 >seq5492 Length=8422 Score = 104 bits (114), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCA 95074 |||||||| | || | | ||||| || |||| ||| || | | || ||| | || Sbjct 6540 TGGGGTGTCACTCCGACCGATCTGTGGGATTGGGCAGCGCTGAAGGAGCGGATTTC--CA 6597 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| ||| ||| ||||| || || || ||||| || || |||||||| || | Sbjct 6598 AGCACGGAGTGCGCAACAGTCTGCTGGTCGCGCCGATGCCGACCGCGTCCACGGCCCAAA 6657 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 |||| |||||||||||||| ||||| || | ||| || ||| | |||| ||| || |||| Sbjct 6658 TCCTCGGCAACAACGAGTCCTTCGAGCCATACACATCAAACATCTACAGCAGACGCGTGC 6717 Query 95195 TCGCCGGGGAATTCC 95209 | |||| || |||| Sbjct 6718 TGTCCGGCGACTTCC 6732 >seq12421 Length=2797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| ||||| ||| ||| ||||| || || || ||||| || || |||||||| || Sbjct 270 CAAGCACGGGGTGCGCAACAGTCTGCTGGTTGCGCCGATGCCGACCGCGTCCACGGCCCA 211 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||||| |||||||||||||| || || || | ||| |||||| | |||| ||| || || Sbjct 210 AATCCTCGGCAACAACGAGTCCTTTGAGCCATACACATCCAACATCTACAGCAGACGCGT 151 Query 95193 GCTCGCCGGGGAATTCC 95209 ||| | || || |||| Sbjct 150 GCTGTCTGGCGACTTCC 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494101549379000