Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2970 131 2e-25 seq10184 114 1e-20 seq3991 113 4e-20 seq2067 105 7e-18 seq1539 100 3e-16 seq8832 91.5 1e-13 seq12421 89.7 5e-13 seq5492 84.2 2e-11 seq2518 84.2 2e-11 >seq2970 Length=24236 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| || || | | ||| ||||||||| |||||||| ||| || ||| || Sbjct 8087 CGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8028 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||||||||| || | | |||| || || ||||| || | || |||||||| ||| Sbjct 8027 TCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTG 7968 Query 138520 TCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || |||| | |||| |||||| | || | ||||| || ||| ||||| | || | Sbjct 7967 TCAGTGA-TCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTAT 7909 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || |||| |||||| |||||||| ||||| Sbjct 7908 GGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| || || | | ||| ||||||||| |||||||| ||| || ||| || Sbjct 8315 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8256 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||||||||| || | | |||| || || ||||| || | ||||| || || ||| Sbjct 8255 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 8196 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||| ||| ||| | | || | ||| || | ||| ||||| | || | Sbjct 8195 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 8136 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || |||| |||||| |||||||| ||||| Sbjct 8135 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| ||||| | | ||| ||| ||||| |||||||| ||| | ||| || Sbjct 7859 CGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCA 7800 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||||||||| || | | |||| || || ||||| || | ||||| || || ||| Sbjct 7799 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 7740 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||| ||| ||| | | || | ||| || | ||| ||||| | || | Sbjct 7739 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 7680 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || |||| |||||| |||||||| ||||| Sbjct 7679 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 102 bits (112), Expect = 8e-17 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| || || | | ||||||||||||| |||||||| ||| || |||||| Sbjct 14483 CGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCA 14424 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| || | | |||| | ||| || || ||||| || ||||| || ||| Sbjct 14423 TCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTG 14364 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGAC-TCCAC-CTCGACCGTC 138576 || ||||||| || | |||| || || || || | || | ||| || | || Sbjct 14363 TCCTGGATTTTTGCCTTCACATTG-TCTACAGTATCCG--AACTTTCACATTCCAGGGTT 14307 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || ||||||||||| || ||||| ||||| Sbjct 14306 ATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| ||| || || | | |||| || ||||| |||||||||||| || ||| || Sbjct 14255 CGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCA 14196 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| || | | | || || || || || ||||| || ||||| || ||| Sbjct 14195 TCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTG 14136 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGAC-TCCAC-CTCGACCGTC 138576 || ||||||| || | |||| || || || || | || | ||| || | || Sbjct 14135 TCCTGGATTTTTGCCTTCACATTG-TCTACAGTATCCG--AACTTTCACATTCCAGGGTT 14079 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || ||||| ||||| |||||||||||||| Sbjct 14078 ATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq10184 Length=3342 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 138430 TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGA 138489 ||||||||||||||| || || || |||||| |||||||| |||| |||| || Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 138490 CGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACG 138549 ||||| |||||||| || || ||||| ||||| ||| || || | | ||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 |||||| |||||||||| || | || | ||| || || ||||| || || || || || Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 138610 TGCATGGC 138617 |||||||| Sbjct 968 TGCATGGC 975 >seq3991 Length=17808 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||| | | ||||||||||||| |||||||| ||| || |||||| Sbjct 12074 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCA 12133 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||||||||||||| || | | | || | || ||||||||||| || ||||| || ||| Sbjct 12134 TCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTG 12193 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || |||||| || | |||| || ||||| || | || || | || | Sbjct 12194 TCCTGGATTTTCGCCTTCACATTG-TCTACGGTATCAGAACTTTCGCATTCCAAGGTTAT 12252 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || || ||||| |||||||||||||| Sbjct 12253 GGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2067 Length=34267 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 138430 TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGA 138489 ||||||||||||||| || || || |||||| |||||||| |||| |||| || Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 138490 CGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACG 138549 ||||| |||||||| || || || || ||||| ||| || || | | ||||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 || ||| |||||||||| || | || | ||| || || ||||| || || || || || Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 138610 TGCATGGC 138617 |||||||| Sbjct 29760 TGCATGGC 29767 >seq1539 Length=61058 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| || || | | ||| ||||||||| |||||||| ||| || ||| || Sbjct 9333 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9274 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||||||||| || | | |||| || || || || || | || || || || || Sbjct 9273 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9214 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||| ||| ||| | | || | ||| || | ||| ||||| | || | Sbjct 9213 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATG 9154 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || ||||| ||||| || ||||| ||||| Sbjct 9153 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||| | | | | ||| ||||| || ||||||||| || ||| || Sbjct 9789 CGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 9730 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||||||||| || | | |||| || || || || || | || || || || || Sbjct 9729 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9670 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||| ||| ||| | | || | ||| || | ||| ||||| | || | Sbjct 9669 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATG 9610 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || ||||| ||||| || ||||| ||||| Sbjct 9609 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq8832 Length=4481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 138430 TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGA 138489 ||||||||||||||| || || || ||||| |||||||| |||| |||| || Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 138490 CGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACG 138549 || || |||||||| || || || || || || ||| || || | | ||||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 |||||| ||||||||| || | || | ||| || || ||||| || || || || || Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 138610 TGCATGGC 138617 |||||||| Sbjct 782 TGCATGGC 789 >seq12421 Length=2797 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 153018 ATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTG 153077 ||||| | | |||| | | ||| || ||||| | || ||| ||||| || | ||| Sbjct 112 ATCAAATGCGGGTTTAGGATTTGGAAGTCGCCAGACAGCACGCGTCTGCTGTAGATGTTG 171 Query 153078 CTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGC 153137 ||| | || |||||||| ||||| ||||| || ||||| ||||||| ||||||||| Sbjct 172 GATGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGC 231 Query 153138 ATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCC 153197 || ||| |||| || | || |||| |||||| ||| ||||||| |||| Sbjct 232 ATCGGCGCAACCAGCAGACTGTTGCGCACCCCGTGCTTGGCAATCCGCTCCTTCATCGCC 291 Query 153198 TGCCAATCCCACAG 153211 ||| |||||||| Sbjct 292 GCCCAGTCCCACAG 305 >seq5492 Length=8422 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 153018 ATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTG 153077 ||||| | | |||| | | ||| || ||||| | || ||| ||||| || | || Sbjct 6754 ATCAAATGCGGGTTTAGAATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTT 6695 Query 153078 CTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGC 153137 ||| | || || ||||| ||||| ||||| || ||||| ||||||| ||||||||| Sbjct 6694 GATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGC 6635 Query 153138 ATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCG-TCCTTCAACGC 153196 || ||| |||| || | || |||| |||||| | ||| || ||||||| ||| Sbjct 6634 ATCGGCGCGACCAGCAGACTGTTGCGCACTCCGTGCT-TGGAAATCCGCTCCTTCAGCGC 6576 Query 153197 CTGCCAATCCCACAG 153211 |||||||||||| Sbjct 6575 TGCCCAATCCCACAG 6561 >seq2518 Length=16751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCT-TCGGCGTCGCTGTAC 153644 |||| | || |||||| || |||| || || || || ||||| | |||| | |||| Sbjct 10547 ATCGCTGCAGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGA-GTAC 10605 Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT 153704 | | |||||||| ||| |||||| ||| || ||| || | ||| ||||| || Sbjct 10606 TCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGAC 10665 Query 153705 TTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 ||||| ||||||||||| ||| | | ||||||||| |||||| ||| Sbjct 10666 TTGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTCG 10713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495638815278000