Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2970 134 1e-26 seq3991 129 4e-25 seq1539 125 5e-24 seq2297 84.2 2e-11 >seq2970 Length=24236 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| ||||||||||| | |||||||| |||||||||||| | | | | | ||| Sbjct 7856 AAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCT 7797 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | |||| || ||||| || | || || || ||||||||| Sbjct 7796 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 7737 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || |||||||| ||| | || || ||||| || | || || || ||||| ||||| Sbjct 7736 GTGATCTTTGCTTTC-ACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 7678 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| |||||||||||||| Sbjct 7677 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || |||||||| | || ||||| |||||||||||| | | ||| | ||| Sbjct 8312 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8253 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | |||| || ||||| || | || || || ||||||||| Sbjct 8252 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 8193 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || |||||||| ||| | || || ||||| || | || || || ||||| ||||| Sbjct 8192 GTGATCTTTGCTTTC-ACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 8134 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| |||||||||||||| Sbjct 8133 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || || ||||| | || ||||| |||||||||||| | | ||| | ||| Sbjct 8084 AAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8025 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | |||| || ||||| || | ||||| |||||||||||| Sbjct 8024 TCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCA 7965 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || |||||||| | | | || || || || || | || || || | ||| ||||| Sbjct 7964 GTGATCTTTGCTTTA-ATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGT 7906 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| |||||||||||||| Sbjct 7905 TTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || || ||||| || || ||||| |||||||||||| | | | | | ||| Sbjct 14480 AAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCT 14421 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | |||||||| || || || ||| || || |||||||| Sbjct 14420 TCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCC 14361 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || ||| | |||| |||||| | |||| || | ||| |||||| Sbjct 14360 TGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTT 14301 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||||||| || ||||||||||| Sbjct 14300 TTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 >seq3991 Length=17808 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| ||||||||||| | |||||||| || ||||| ||| | | | | | ||| Sbjct 17045 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCT 17104 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | |||| || || || || ||||||| || ||||| ||| Sbjct 17105 TCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 17164 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||| ||| ||| | || || ||||| || | || || || ||||| ||||| Sbjct 17165 GTGATCTTTGC-TTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 17223 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| |||||||||||||| Sbjct 17224 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| ||||||||||| | |||||||| || ||||| ||| | | | | | ||| Sbjct 17273 AAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 17332 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| |||||| || || | |||| || ||||| || | || || || ||||| ||| Sbjct 17333 TCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCA 17392 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||| ||| ||| | || || ||||| || | || || || ||||| ||||| Sbjct 17393 GTGATCTTTGC-TTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 17451 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| |||||||||||||| Sbjct 17452 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || ||||| |||||||||||| | | ||| | ||||| Sbjct 11851 AACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTC 11910 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| || || | |||| || || ||||| || || || |||||||| Sbjct 11911 CAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTG 11970 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | |||| |||||| | |||| |||| ||| || ||||| Sbjct 11971 GATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATAGTTTT 12030 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||||||||| ||||||||||| Sbjct 12031 TCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || ||||| |||||||||||| | | | | | || Sbjct 12077 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCC 12136 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | ||||| || |||||||| ||| || || |||||||| Sbjct 12137 TCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCC 12196 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || ||| | |||| ||||| | |||| || ||||| |||||| Sbjct 12197 TGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTT 12256 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| |||||||| ||||| Sbjct 12257 TTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq1539 Length=61058 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || |||||||| | || ||||| |||||||||||| | | | | | ||| Sbjct 9558 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9499 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | || | || || || || ||||||| || ||||| ||| Sbjct 9498 TCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9439 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || |||||||| ||| | || || ||||| || | || || || ||||| ||||| Sbjct 9438 GTGATCTTTGCTTTC-ACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 9380 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| |||||||||||||| Sbjct 9379 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || |||||||| | || ||||| |||||||||||| | | | | | ||| Sbjct 9330 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9271 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | || | || || || || ||||||| || ||||| ||| Sbjct 9270 TCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9211 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || |||||||| ||| | || || ||||| || | || || || | ||| ||||| Sbjct 9210 GTGATCTTTGCTTTC-ACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGT 9152 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || ||||| ||||| || ||||||||||| Sbjct 9151 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||||||||| | |||||||| || ||||| ||| | | | | | ||| Sbjct 9786 AACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCT 9727 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | || | || || || || ||||||| || ||||| ||| Sbjct 9726 TCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9667 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || |||||||| ||| | || || ||||| || | || || || | || ||||| Sbjct 9666 GTGATCTTTGCTTTC-ACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGT 9608 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || ||||| ||||| || ||||||||||| Sbjct 9607 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq2297 Length=32998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15044 ATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAA 15103 ||| |||||| || || || ||||| ||||||||||| ||| ||| || ||| Sbjct 3047 ATACCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACAT 2988 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 |||| || || ||||| || || || ||||||||||| || || || ||||| || | Sbjct 2987 TTTCAATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGA 2928 Query 15164 CAAAAATTTGCATA 15177 |||| ||||||||| Sbjct 2927 CAAAGATTTGCATA 2914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356954141749625