Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3991 122 8e-23 seq2970 113 4e-20 seq1539 95.1 1e-14 seq8832 89.7 5e-13 seq2297 89.7 5e-13 seq27157 86.0 6e-12 seq6138 86.0 6e-12 seq615 86.0 6e-12 seq10184 84.2 2e-11 seq9051 82.4 7e-11 >seq3991 Length=17808 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | |||||| | ||| || ||||| ||||||||||| || |||||| Sbjct 12059 ATTCCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCG 12118 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | |||||||||||| | ||||| ||||| |||||||| Sbjct 12119 GCCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGT 12178 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || ||||| || | |||||||| || ||| ||| Sbjct 12179 GGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCG 12238 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | || | ||||| || ||||| ||||| |||||||| ||||| Sbjct 12239 CATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | || || | || || ||||| ||||||||||| || |||||| Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||||||||||||||| | |||| ||||||||||||||||| Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || ||||| || | ||||| || || ||| || | Sbjct 11954 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACAT 12013 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| || || ||||||||||| ||||||||||| Sbjct 12014 TCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | ||| || | ||| || || | || ||||||||||| || ||| Sbjct 17027 ATTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCG 17086 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||||||||| || || | |||| |||||||| || | Sbjct 17087 GCCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTT 17146 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||| || ||| ||| | || | ||| || |||| Sbjct 17147 GGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCG 17206 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| ||||| | |||||| |||||||||||||| Sbjct 17207 ACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 >seq2970 Length=24236 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | || | ||| || | || || ||||| ||||||||||| || |||||| Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| ||||||||||||||||| | ||||| |||||||| ||||| || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || |||||| || | ||||| || || ||| || | Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACAT 14316 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| ||||| |||||||| || ||||||||||| Sbjct 14315 TCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | ||| || | || || |||| ||||||||||| || |||||| Sbjct 8102 ATTCCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCG 8043 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||||||| || | |||| ||||| || || | | Sbjct 8042 GCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTC 7983 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || ||| ||| || || | ||||| | | |||| Sbjct 7982 GGAATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCG 7923 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| ||||| | |||||| |||||||||||||| Sbjct 7922 ACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | || || | || || |||||||| |||||||| || || ||| Sbjct 14270 ATTCCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCG 14211 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||||||||||||||| | |||| |||||||| ||||| Sbjct 14210 GCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGT 14151 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || |||||| || | ||||| || || ||| || Sbjct 14150 GGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCA 14091 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 14090 CATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq1539 Length=61058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | ||| || | || || |||| ||||||||||| || |||||| Sbjct 9576 ATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCG 9517 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||||||||||||||| | || | |||||||| || | Sbjct 9516 GCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTT 9457 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||| || ||| ||| | || | ||| || |||| Sbjct 9456 GGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCG 9397 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| ||||| | |||||| |||||||||||||| Sbjct 9396 ACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | |||||| | ||| || || | || ||||||||||| || ||| Sbjct 9804 ATTCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCG 9745 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||||||| || | || | |||||||| || | Sbjct 9744 GCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTT 9685 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||| || ||| ||| | || | ||| || |||| Sbjct 9684 GGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCG 9625 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| ||||| || ||||| || ||||||||||| Sbjct 9624 ACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | ||| || | || || |||| ||||||||||| || |||||| Sbjct 9348 ATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCG 9289 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||||||| || | || | |||||||| || | Sbjct 9288 GCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTT 9229 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||| || ||| ||| | || | ||| || |||| Sbjct 9228 GGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCG 9169 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| ||||| || ||||| || ||||||||||| Sbjct 9168 ACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 >seq8832 Length=4481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| |||||| || ||| | || | |||||||||||||||||| ||||| || || Sbjct 631 ATCCTCCAGTTGTTTGCCGGCGAAGATGAGTCGTTGCTGGTCCGGCGGGATGCCCTCCTT 690 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||| || || || || | || | || || |||||| ||||| | || || || | Sbjct 691 ATCCTGGATCTTGGCCTTCA-CGTTCTCCACCGTGTCGTTCGACTCCATGTCCAGTGTGA 749 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 ||| || ||||| || || || || || |||||||| ||| Sbjct 750 TCGTCTTCCCGGTCAGCGTCTTCACGAAGATTTGCATGGCG 790 >seq2297 Length=32998 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||| ||| |||||||| ||||| ||||||||||| || || ||||| || |||| Sbjct 3047 ATACCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACAT 2988 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | |||||| | ||| ||||| | |||| || |||||||| ||||| || | Sbjct 2987 TTTCAATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGA 2928 Query 45328 CAAAAATTTGCATCGCG 45344 |||| |||||||| ||| Sbjct 2927 CAAAGATTTGCATAGCG 2911 >seq27157 Length=1261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||| || |||||||| ||||| ||||||||||| || || ||||| || |||| Sbjct 884 ATACCAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACAT 825 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | |||||| | ||| ||||| | |||| || |||||||| ||||| || | Sbjct 824 TTTCAATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGA 765 Query 45328 CAAAAATTTGCATCGCG 45344 |||| |||||||| ||| Sbjct 764 CAAAGATTTGCATAGCG 748 >seq6138 Length=12267 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||| || || ||||| ||||| ||||| ||||| || |||||||| || |||| Sbjct 9197 ATACCAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGT 9256 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | |||||| | |||||| || ||||| | || ||||| || |||||||| | Sbjct 9257 TTTCGATGGTGTCACTTGCCTCGACCTCAAGAGTTATGGTCTTGCCAGTGAGAGTTTTGA 9316 Query 45328 CAAAAATTTGCATCGCG 45344 | ||||||||||| ||| Sbjct 9317 CGAAAATTTGCATGGCG 9333 >seq615 Length=100005 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 124128 ACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTG 124187 || ||||| || ||||||||||| | | || | || || | | |||||| || Sbjct 5773 ACTCCGACCGATCTGTGGGACTGGGCGGCGCTGAAGGAGCGGATTGCCAAGCACGGGGTG 5714 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 || ||| ||| |||||||| |||||||| || |||| || ||||| | || ||| Sbjct 5713 CGCAACAGTCTGCTGGTGGCGCCGATGCCGACCGCGTCCACGGCCCAAATCCTCGGCAAC 5654 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 ||||| ||||||||||| | ||| ||| | ||| | || ||| || ||||||| Sbjct 5653 AACGAGTCCTTCGAGCCATACACATCAAATATTTACAGCAGGCGCGTGCTATCCGGCGAC 5594 Query 124308 TTTCAAGTGATAAATCATCATTTGGTG 124334 || ||| | |||| | |||||| || Sbjct 5593 TTCCAAATCCTAAACCCGCATTTGATG 5567 >seq10184 Length=3342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| |||||| || ||| | || | ||| |||||||||||||| |||||||| || Sbjct 818 TCCTCCAGTTGTTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGCGGGATGCCTTCCTTG 877 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || || || | || | || || |||||| ||||| || || | || | Sbjct 878 TCCTGGATCTTGGCCTTCA-CGTTCTCCACCGTGTCGTTCGACTCCACATCCATGGTGAT 936 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 ||| || ||||| || || || || || |||||||| ||| Sbjct 937 CGTCTTCCCGGTCAGTGTCTTCACGAAGATTTGCATGGCG 976 >seq9051 Length=5414 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| || ||||| || ||||| || |||||||| || |||| ||| | | Sbjct 4638 CGCTGCTGATCTGGCGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATG 4697 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| | ||||||||| ||||| | || ||||| || |||||||| || |||||| Sbjct 4698 GTGTCACTTGCCTCGACTTCAAGAGTGATGGTCTTGCCAGTGAGAGTTTTGACGAAAATT 4757 Query 45336 TGCAT 45340 ||||| Sbjct 4758 TGCAT 4762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451435229729000