Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12421 91.5 2e-13 seq52 91.5 2e-13 seq5492 82.4 9e-11 seq2518 82.4 9e-11 >seq12421 Length=2797 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||||||||||||||| |||| ||||| || | ||||||||| ||||| Sbjct 163 TAGATGTTGGATGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGAC 222 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || || ||||| || || | || || |||||||| Sbjct 223 GCGGTCGGCATCGGCGCAACCAGCAGACTGTTGCG 257 >seq52 Length=196430 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || || ||||| |||||||| ||||| | ||| || || |||| || || | || Sbjct 168138 CCCACCGCGTCGATTTCGTCGATGAACAAGATGCAAGGGGCCTTTTTGCGCGCCATCTCG 168079 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || || || || || | | | ||| || ||||||||||| |||| ||| | || | || Sbjct 168078 AACATGTCCCGGACCCGACTCGGACCCACGCCCACAAACATTTCCAGAAACTCGGAGCCG 168019 Query 12996 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 || | |||||| || || |||| || || ||| | ||| ||| | |||||||| Sbjct 168018 GAGACTGTGATGAATGGAACATTGGCCTCGCCAGCGGTCGCTTTGGCCAACAGGGTCTTT 167959 Query 13056 CCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGA 13095 || ||||| ||| || | ||||||||||| ||| || Sbjct 167958 CCAGTCCCGGGTGGGCCGGTCAGAAGGGCACCCTGTGCGA 167919 >seq5492 Length=8422 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||||||||||| ||| |||| ||||| || | ||||||||| ||||| Sbjct 6703 TAGATGTTTGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGAC 6644 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || || ||||| || || | || || |||||||| Sbjct 6643 GCGGTCGGCATCGGCGCGACCAGCAGACTGTTGCG 6609 >seq2518 Length=16751 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||||||||||| ||| |||| ||||| || | ||||||||| || || Sbjct 9594 TAGATGTTGGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTTGAC 9653 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || || ||||| || || | || || |||||||| Sbjct 9654 GCGGTTGGCATCGGCGCGACCAGCAGACTGTTGCG 9688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612736289859000