Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2518 95.1 2e-14 seq615 95.1 2e-14 seq5492 89.7 8e-13 >seq2518 Length=16751 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 203929 GTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCT 203988 ||||||||| | || ||| | |||| || || | ||| | |||||| ||||| || Sbjct 9231 GTGCATGGAGGTGAGCTTGGCGTAGGTGGGCTCCGCGACGTGCAAGTTCAGCGACTGACT 9290 Query 203989 TTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 |||| |||||| || ||||| || |||| ||| | ||| | | ||||||||| ||||| Sbjct 9291 TTGGCAGATGAACGGAGCCCGGTCGGCGGACATTTGGATGACGTCCTTCTGCGAGATCTC 9350 Query 204049 CCACACCGTCTTGAACA 204065 ||||||||| ||| ||| Sbjct 9351 CCACACCGTTTTGTACA 9367 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 || ||||| | ||| || ||||| ||||||||||| | || | || | | |||| ||| Sbjct 9549 TGCGGGTTCAGGATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTGGATGTG 9608 Query 204242 AATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGA 204301 |||| ||||| | |||||||||||||| || || || || || || ||||| || Sbjct 9609 TATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTTGACGCGGTTGGCATCGGC 9668 Query 204302 GCCAGGAGCAGGGAGTTGCGCACACCGT 204329 || | ||||| ||||||||| |||| Sbjct 9669 GCGACCAGCAGACTGTTGCGCACTCCGT 9696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 204841 GGCGGCCAGATTGCACACCGCGGGTCTGTGTGGCTCGCTCAC--CTCCACGATCTCGGTG 204898 || ||||| |||||||| |||| ||| |||| || | ||| | |||||||||| Sbjct 10563 GGAGGCCAAGTTGCACACTGCGG-TCTCGGTGGG-CGAAGAGTACTCGATGATCTCGGTG 10620 Query 204899 CACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAG 204958 |||| ||| |||||| | ||| | || ||||||||| ||||||||||| || | | Sbjct 10621 CACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGACTTGCGGTTGCACGCG 10680 Query 204959 TCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 |||||||||| |||| |||| | ||| | || |||| || Sbjct 10681 TCCTTGTACACCATGTACGGGGTGCCGGTTTCGGTCTGCGA 10721 >seq615 Length=100005 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 203929 GTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCT 203988 ||||||||| | || ||| | |||| || || | ||| | |||||| ||||| || Sbjct 5254 GTGCATGGAGGTAAGCTTGGCGTAGGTGGGCTCCGCGACGTGCAAGTTCAGCGACTGACT 5313 Query 203989 TTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 ||| |||||| || ||||| || |||| ||| | ||| | | ||||||||| ||||| Sbjct 5314 CTGGCAGATGAACGGAGCCCGGTCGGCGGACATTTGGATGACGTCCTTCTGCGAGATCTC 5373 Query 204049 CCACACCGTCTTGAACA 204065 ||||||||||||| ||| Sbjct 5374 CCACACCGTCTTGTACA 5390 >seq5492 Length=8422 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 203929 GTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCT 203988 ||||||||| | || ||| | |||| || || | ||| | |||||| ||||| || Sbjct 7074 GTGCATGGAGGTGAGCTTGGCATAGGTGGGCTCCGCGACGTGCAAGTTCAGCGACTGACT 7015 Query 203989 TTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 ||| |||||| || ||||| || |||| ||| | ||| ||| |||||||| || || Sbjct 7014 TTGACAGATGAACGGTGCCCGGTCGGCGGACATCTGGATGATGTCCTTCTGCGGGATTTC 6955 Query 204049 CCACACCGTCTTGAACA 204065 ||||||||||||| ||| Sbjct 6954 CCACACCGTCTTGTACA 6938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794156037794000