Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2970 120 7e-22 seq10184 116 9e-21 seq2067 113 1e-19 seq8832 107 5e-18 seq3991 107 5e-18 seq1539 102 2e-16 seq6138 91.5 3e-13 seq22 89.7 1e-12 seq9051 86.0 1e-11 >seq2970 Length=24236 Score = 120 bits (132), Expect = 7e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | || || | |||||| || ||||||||||||| |||||| || |||||||| Sbjct 14490 TCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGT 14431 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| || ||||| || ||||| | ||| ||||| ||||| || || Sbjct 14430 ACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACC 14371 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACAT-CCA 199586 || ||||| || ||| |||||| || || || || | |||| |||| ||| Sbjct 14370 CTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTC-ACATTCCA 14312 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||||||||| |||||||| Sbjct 14311 GGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTG 14272 Score = 107 bits (118), Expect = 5e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | |||||| || || || ||||||| ||||||||| |||||||| | ||||| Sbjct 14253 CAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATC 14194 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || ||||| || || || || || ||||| ||||| || || || || Sbjct 14193 TTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTC 14134 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACAT-CCAACGTGATCG 199595 ||| || ||| |||||| || || || || | |||| |||| ||| || || | Sbjct 14133 CTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTC-ACATTCCAGGGTTATGG 14075 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || |||||||||||||| || Sbjct 14074 TTTTTCCGGTCAGGGTTTTCACAAAAATCTG 14044 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/206 (72%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || | ||||||||||| |||||| || |||||||| | |||||||| || || Sbjct 8076 GTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTG 8017 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTC---CGGAA-AAATTCCTTCTCGCTCCTGAA 199541 ||||| || ||||| || || || || || ||||| | |||||| || | | Sbjct 8016 TTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGT----GA 7961 Query 199542 TCTTTTGCTTCACGGAT-TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || ||||||| | | || | ||||| || | || || |||| || || || || Sbjct 7960 TC-TTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTC 7902 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | |||||||||||||||||| Sbjct 7901 CCGGTCAAAGTTTTCACAAAAATTTG 7876 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||| || ||||||||||| | |||||||||||||||||| |||| || Sbjct 14398 ATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAACATCCAAAAG 14457 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||| || || ||| | |||||| | ||| || Sbjct 14458 GAGTCAACCCTCCACTTGGTTTTGCGCCTTAGA 14490 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || | ||||||||||| |||||| || |||||||| | |||||||| || || Sbjct 8304 GTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTG 8245 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || || ||||| || || || || || | || || || || ||||| Sbjct 8244 TTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTT 8185 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | ||||| || | ||| || | | || || ||||| || || || || || || Sbjct 8184 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGT 8125 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||||||||||||||| Sbjct 8124 CAAAGTTTTCACAAAAATTTG 8104 >seq10184 Length=3342 Score = 116 bits (128), Expect = 9e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 ||||||||| |||| || | ||| || ||||| || || ||||||||||| || ||||| Sbjct 793 GTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGTCGCTG 852 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||||||||| || ||||| ||||| ||||| ||||||| || || ||||| Sbjct 853 CTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACCGTGTC 912 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || ||||||| ||||||||||| || || || || ||||| || ||||| Sbjct 913 GTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATTTG 969 >seq2067 Length=34267 Score = 113 bits (124), Expect = 1e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 ||||||||| |||| || | ||| || ||||| || || |||||||||||||| ||||| Sbjct 29585 GTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGTCGCTG 29644 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||||||||| || || || ||||| ||||| ||||||| || || || || Sbjct 29645 CTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACTGTATC 29704 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || ||||||| ||||||||||| || || || || ||||| || ||||| Sbjct 29705 GTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATTTG 29761 >seq8832 Length=4481 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 ||||||||| |||| || | |||||| ||||| || || |||||||||||||| || || Sbjct 607 GTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGTCGTTG 666 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||||||||| || || || ||||| ||||| ||||||| || || ||||| Sbjct 667 CTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACCGTGTC 726 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || | |||| ||||||||||| || || || || ||||| || ||||| Sbjct 727 GTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATTTG 783 >seq3991 Length=17808 Score = 107 bits (118), Expect = 5e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | |||||| || ||||||||||||| |||||| || |||||||| | ||||| Sbjct 11848 CAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATC 11907 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || ||||| || || || || || ||||||||||| || || || || Sbjct 11908 TTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTC 11967 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACA-TCCAACGTGATCG 199595 ||| || || |||||| || || || || | |||| ||| || | || || | Sbjct 11968 CTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTC-ACATTCTAGGGTTATAG 12026 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || |||||||| || |||||||| Sbjct 12027 TTTTTCCAGTCAGAGTTTTTACGAAAATTTG 12057 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || ||||||||||||| |||||| || |||||||| | ||||| || || || Sbjct 12086 TGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCCTCGAGTTGT 12145 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || || || | || || |||||||| || || || ||||| || || Sbjct 12146 TTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATTTTC 12205 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| || ||||| || | |||| ||||| || || || || ||||| Sbjct 12206 GCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTTTCCCGTT 12265 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || |||||||||||||| || Sbjct 12266 AGGGTTTTCACAAAAATCTG 12285 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || | ||| ||||||| |||||||| |||||||| | |||||||||| || Sbjct 17054 TGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTGT 17113 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| || || ||||| || | ||| || || || |||||| Sbjct 17114 TTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTT 17173 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| || | ||| || | | || || ||||| || || || || || || Sbjct 17174 GCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTC 17233 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||||||||||||||| Sbjct 17234 AAAGTTTTCACAAAAATTTG 17253 >seq1539 Length=61058 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || | ||||||||||| |||||| || |||||||| | |||||||||| || Sbjct 9550 GTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTG 9491 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| || |||||||| || ||||| || | ||| || || || ||||| Sbjct 9490 TTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 9431 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | ||||| || | ||| || | | || || ||||| || || || || || || Sbjct 9430 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGT 9371 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||||||||||||||| Sbjct 9370 CAAAGTTTTCACAAAAATTTG 9350 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || | ||||||||||| |||||| || |||||||| | |||||||| || || Sbjct 9322 GTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCGAGTTG 9263 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||| || |||||||| || ||||| || | ||| || || || ||||| Sbjct 9262 TTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 9203 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | ||||| || | ||| || | | || || |||| || || || || || || Sbjct 9202 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGTTTTTCCGGT 9143 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || |||||||| |||||||| Sbjct 9142 CAGGGTTTTCACGAAAATTTG 9122 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || ||||| || ||||||||||| | |||||||||||||||||| |||| Sbjct 9473 CTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAACATCCAA 9532 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTG 201021 || ||| | || |||||| | |||||| Sbjct 9533 AAGGAGGCAACCCTTCACTTGGTTTTG 9559 >seq6138 Length=12267 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 ||||||||||| |||||| ||||||||| || |||||||| ||| ||| |||| Sbjct 9202 AGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCG 9261 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | |||||| ||| || || || | || || ||||| || ||||||||||| || ||| Sbjct 9262 ATGGTGTCACTTGCCTCGACCTCAAGAGTTATGGTCTTGCCAGTGAGAGTTTTGACGAAA 9321 Query 199622 ATTTG 199626 ||||| Sbjct 9322 ATTTG 9326 >seq22 Length=212208 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || |||||||| |||| |||||||||||| | ||| Sbjct 70462 CGAAGACGCAACACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTA 70521 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 199500 | ||||| || |||||||| || |||||||| Sbjct 70522 CGACCATCCTCGAGCTGCTTGCCAGCGAAGAT 70553 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || |||||||| |||| |||||||||||| | ||| Sbjct 71254 CGAAGACGCAACACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTA 71313 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 199500 | ||||| || |||||||| || |||||||| Sbjct 71314 CGACCATCCTCGAGCTGCTTGCCAGCGAAGAT 71345 >seq9051 Length=5414 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||| | || ||||| | ||| | |||||||||||| ||||||| Sbjct 3729 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTGCCGATTACAACATCCAGAAG 3670 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| || || |||||||| ||| | ||||| Sbjct 3669 GAGTCCACCCTGCACCTTGTGTTGCGTCTTCG 3638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177403176610175