Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3991 95.1 8e-15 seq2970 95.1 8e-15 seq1539 84.2 2e-11 >seq3991 Length=17808 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| |||||||| | ||| |||||||| ||||| || ||||||||| || || Sbjct 17042 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCA 17101 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||||||||| |||| || | || |||||||| | || | ||| || || Sbjct 17102 TCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 17161 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || ||| ||| | | | | || || ||| || || ||||| || || Sbjct 17162 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17221 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || || || ||||| Sbjct 17222 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| ||||| || | || || ||||| || || |||||||||||| || || Sbjct 11846 CGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 11905 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| || ||||||| | || ||||| |||| || | || || ||| Sbjct 11906 TCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTG 11965 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| || | | |||| || || | ||||| || | || || Sbjct 11966 TCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATA 12025 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | |||||||||||| || ||||| Sbjct 12026 GTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| |||||||| | || || ||||| || || |||||||||||| || || Sbjct 12074 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCA 12133 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||| || ||||||| || || || || |||| || | || || ||| Sbjct 12134 TCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTG 12193 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| || | | |||| || || | ||||| ||||| || || Sbjct 12194 TCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATG 12253 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||||| ||||| || || |||||||| Sbjct 12254 GTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2970 Length=24236 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| ||||| || | || ||||||||| || || || ||||||||| ||| || Sbjct 14255 CGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCA 14196 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| || ||||||| | || |||||||||| || | || || ||| Sbjct 14195 TCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTG 14136 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| || | | |||| || || | ||||| |||| || || Sbjct 14135 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14076 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||||| || || |||||||| Sbjct 14075 GTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || || |||||||||||| || |||| ||||||||||| || |||| Sbjct 14459 TCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAG 14400 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || ||||| |||||||||| || | || || ||||| |||||| || | | Sbjct 14399 ATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTG 14340 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 |||| || || | ||||| |||| || || ||||| || || | |||||| ||| Sbjct 14339 TCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACG 14280 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 14279 AAAATTTGCAT 14269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || || |||||||||||| || |||| || | |||||| || |||| Sbjct 8063 TCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAG 8004 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | || || ||||| | || | ||||| ||||| || ||| |||||| | Sbjct 8003 ATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTA 7944 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | |||||| | || || || |||| || || ||||| || || |||||||| || Sbjct 7943 TCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACA 7884 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 7883 AAAATTTGCAT 7873 >seq1539 Length=61058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || || |||||||||||| ||| |||| ||||||||||| || |||| Sbjct 9537 TCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAG 9478 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | || |||||||| | || | ||| || || || || ||| ||| | | Sbjct 9477 ATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 9418 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || ||| || || ||||| || || ||||| || || |||||||| || Sbjct 9417 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 9358 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 9357 AAAATTTGCAT 9347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346944020677325