Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2067 120 3e-22 seq10184 111 2e-19 seq8845 111 2e-19 seq1539 111 2e-19 seq51152 107 2e-18 seq8832 107 2e-18 seq2970 102 8e-17 seq3991 96.9 3e-15 seq3766 86.0 6e-12 seq482 86.0 6e-12 seq6138 84.2 2e-11 >seq2067 Length=34267 Score = 120 bits (132), Expect = 3e-22 Identities = 142/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || || || || |||||| | || || ||| | | | Sbjct 29764 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 29705 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 || | ||| | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 29704 GATACAGTGGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 29647 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| |||||||| ||||| |||| |||||||| |||||||| Sbjct 29646 AGCAGCGACTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACA 29587 Query 38422 ACATCCA 38428 |||| || Sbjct 29586 ACATTCA 29580 >seq10184 Length=3342 Score = 111 bits (122), Expect = 2e-19 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || |||||| | || || ||| | | | Sbjct 972 ATGCAAATCTTCGTGAAGACACTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 913 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| ||| | |||| | || | || |||| ||||| || || || ||||||| ||| Sbjct 912 GACACGGTGGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCAT-CCCGCCGGACC 855 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| |||||||| ||||| |||| |||||||| |||||||| Sbjct 854 AGCAGCGACTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACA 795 Query 38422 ACATCCA 38428 |||| || Sbjct 794 ACATTCA 788 >seq8845 Length=2813 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | || || ||||| |||||| || | || ||||| || |||||||| | Sbjct 2053 CCTCATCGCGCGAGATTAGTTCATTGCTGTGTGTGAGACCAGGCATTAGACCGCGTTTCT 1994 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || || || || ||||||||||| ||||| | || ||||| |||||||| | Sbjct 1993 TCAGCCAGAAAATTGCTGCAAAACTGCCCGAGAAGAAAATTCCTTCGACCGCCGCGAATG 1934 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | |||| | || ||||| || || || | ||| ||||| || | ||||| || | Sbjct 1933 CGACCAATCTTTCTCCGAATGTAGCCTCATGATTGGAAATCCAACGTAATGCCCAATCTG 1874 Query 133097 CCTTTTCTTTGACG 133110 |||||| |||||| Sbjct 1873 CCTTTTTCTTGACG 1860 >seq1539 Length=61058 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || || |||||||| ||| | || |||||| || Sbjct 9118 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAGGTCGAGAGCAG 9177 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| ||| ||| || || ||||| ||||| | || || Sbjct 9178 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9237 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||||| ||||| || || || | ||||| | ||| ||||| Sbjct 9238 GCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGATTACAA 9297 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| || || || || ||||| |||| Sbjct 9298 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || || |||||||| ||| | || |||||| || Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| ||| ||| || || ||||| ||||| | || || Sbjct 9406 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9465 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || || ||||| |||| || | ||||| | ||| ||||| Sbjct 9466 GCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAA 9525 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| || || || || ||||| |||| Sbjct 9526 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9561 >seq51152 Length=820 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | || || ||||| |||||| || | || ||||| || |||||||| | Sbjct 29 CCTCATCGCGCGAGATTAGTTCATTGCTGTGTGTGAGACCCGGCATTAGACCGCGTTTCT 88 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || || || ||||||||||| ||||| | || ||||| |||||||| | Sbjct 89 TCAACCAGAAAATTGCTGCAAAACTGCCCGAGAAGAAAATTCCTTCGACCGCCGCGAATG 148 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | |||| | || ||||| || || || | ||| ||||| || | ||||| || | Sbjct 149 CGACCAATCTTTCTCCGAATGTAGCCTCATGATTGGAAATCCAACGTAATGCCCAATCTG 208 Query 133097 CCTTTTCTTTGACG 133110 |||||| |||||| Sbjct 209 CCTTTTTCTTGACG 222 >seq8832 Length=4481 Score = 107 bits (118), Expect = 2e-18 Identities = 139/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || || || || ||||| | ||| | ||| | | | Sbjct 786 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACACTGGACATGGAGTCGAAC 727 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| ||| | |||| | || | || |||| || || ||||| || ||||||| ||| Sbjct 726 GACACGGTGGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCAT-CCCGCCGGACC 669 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||| | ||| |||||||| ||||| || | |||||||| |||||||| Sbjct 668 AGCAACGACTCATCTTCGCCGGCAAACAACTGGAGGATGGACGCACCCTGGCCGACTACA 609 Query 38422 ACATCCA 38428 |||| || Sbjct 608 ACATTCA 602 >seq2970 Length=24236 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || || |||||||| ||| | || |||||| || Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| ||| ||| ||||| ||||| || || | || || Sbjct 7704 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 7763 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||||| ||||| || || || | ||||| | ||| ||||| Sbjct 7764 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACAA 7823 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || || || || |||||||| |||| Sbjct 7824 CATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCG 7859 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || || |||||||| ||| | || |||||| || Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||||| ||| ||| ||||| || || ||||| | || || Sbjct 7932 TGACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCA 7991 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||||| ||||| || || || | || || | ||| ||||| Sbjct 7992 ACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8051 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| || || || || ||||| |||| Sbjct 8052 CATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || || |||||||| ||| | || |||||| || Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| ||| ||| ||||| ||||| || || | || || Sbjct 8160 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 8219 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||||| ||||| || || || | || || | ||| ||||| Sbjct 8220 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8279 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| || || || || ||||| |||| Sbjct 8280 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || || |||||||| ||| | || || | Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14099 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || | | | || | |||||||| ||||| ||||| || || | || || Sbjct 14100 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14159 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||||| |||| || || ||||| |||| || | ||||| | ||||||||| Sbjct 14160 GCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAA 14219 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||| | || || || ||||| ||||| Sbjct 14220 CATCCAAAAAGAATCAACCCTCCACTTGGTTCTGCG 14255 >seq3991 Length=17808 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || ||||| |||||||| ||| | || ||| | Sbjct 12289 AATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTC 12230 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | ||| | | | || | ||||||| ||||| ||||| || || | ||||| Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCA 12170 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||| | |||| || || ||||| || || || | || || | ||| ||||| Sbjct 12169 ACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAA 12110 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || || ||||||||| |||| Sbjct 12109 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 12074 >seq3766 Length=16830 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | || || ||||| |||||| || | || ||||| || |||||||| | Sbjct 146 CCTCATCGCGCGAGATTAGTTCATTGCTGTGTGTGAGACCCGGCATTAGACCGCGTTTCT 87 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || || || ||||||||||| ||||| | || ||||| |||||||| | Sbjct 86 TCAACCAGAAAATTGCTGCAAAACTGCCCGAGAAGAAAATTCCTTCGACCGCCGCGAATG 27 Query 133037 CCACCAGGCGCTCGCCGAACGTGGC 133061 | |||| | || ||||| || || Sbjct 26 CGACCAATCTTTCTCCGAATGTAGC 2 >seq482 Length=68918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | || || ||||| |||||| || | || ||||| || |||||||| | Sbjct 68773 CCTCATCGCGCGAGATTAGTTCATTGCTGTGTGTGAGACCCGGCATTAGACCGCGTTTCT 68832 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || || || ||||||||||| ||||| | || ||||| |||||||| | Sbjct 68833 TCAACCAGAAAATTGCTGCAAAACTGCCCGAGAAGAAAATTCCTTCGACCGCCGCGAATG 68892 Query 133037 CCACCAGGCGCTCGCCGAACGTGGC 133061 | |||| | || ||||| || || Sbjct 68893 CGACCAATCTTTCTCCGAATGTAGC 68917 >seq6138 Length=12267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| || || |||||||||||||| | || |||||||||| Sbjct 8597 AATGCAGATTTTCGTCAAAACTCTGACAGGCAAAACCATCACTCTGGAGGTCGAGGCCAG 8538 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||||| | | | | | || | || |||| |||||||| || | ||||||| || | Sbjct 8537 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCA-TCCCGCCGGATC 8479 Query 38362 AACAGCGGCT 38371 ||||||| || Sbjct 8478 AACAGCGCCT 8469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499544301616000