Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2970 129 2e-24 seq3991 109 2e-18 seq6138 84.2 9e-11 >seq2970 Length=24236 Score = 129 bits (142), Expect = 2e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| |||| || ||||| || || || || || || | Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||| ||||||| ||| || || |||||||| ||||| ||||||| Sbjct 7932 TGACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCA 7991 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| | || || | || |||||||| |||||||| |||||||||| ||||| || Sbjct 7992 ACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8051 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAtttttt 391288 || | ||||| ||||| || ||||| || || | || || ||| ||| || |||| Sbjct 8052 CATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCGCCTCAGGGGAGGAATGCAAATTTT 8111 Query 391289 t 391289 | Sbjct 8112 T 8112 Score = 122 bits (134), Expect = 3e-22 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGA-ATCAT 391107 |||| | ||||| || ||||| |||| || ||||| || || | || || || | || Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 ||||| |||||| | | ||| ||| || || ||||| || || || |||||| Sbjct 8160 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATC 8218 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 ||||||| | || || | ||||||||||| |||||||| |||||||||| ||||| | Sbjct 8219 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACA 8278 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAttttt 391287 | || | ||||| ||||| |||||||| || || | || || ||| ||| || ||| Sbjct 8279 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCGCCTCAGGGGAGGAATGCAAATTT 8338 Query 391288 t 391288 | Sbjct 8339 T 8339 Score = 105 bits (116), Expect = 3e-17 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGA-ATCAT 391107 |||| | ||||| || ||||| |||| || ||||| || || | || || || | || Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 ||||| |||||| | | ||| ||| || || ||||| || || || |||||| Sbjct 7704 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATC 7762 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 ||||||| | || || | ||||||||||| |||||||| | ||||| || ||||| | Sbjct 7763 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACA 7822 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAttttt 391287 | || | || || ||||| ||||| || || || | || || ||| ||| || ||| Sbjct 7823 ACATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCGCCTCAGGGGAGGAATGCAAATTT 7882 Query 391288 tt 391289 || Sbjct 7883 TT 7884 >seq3991 Length=17808 Score = 109 bits (120), Expect = 2e-18 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGA-ATCAT 391107 |||| | ||||| || ||||| |||| || ||||| || || | || || || | || Sbjct 17485 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17426 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 ||||| |||||| | | ||| ||| || |||||||| || || || |||||| Sbjct 17425 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATC 17367 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 ||||||| | || || | ||||||||||| |||||||| | |||||||| || || | Sbjct 17366 AACAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACA 17307 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAttttt 391287 |||| | || || || || ||||| || || || | || || ||| ||| || ||| Sbjct 17306 ATATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCGCCTCAGGGGAGGAATGCAAATTT 17247 Query 391288 tt 391289 || Sbjct 17246 TT 17245 >seq6138 Length=12267 Score = 84.2 bits (92), Expect = 9e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || ||||| || || || |||||||| || || || | Sbjct 9329 ATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACCATAACTCTTGAGGTCGAGGCAAGT 9270 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| ||| | || || |||||||| ||||||||||||||||| ||||| Sbjct 9269 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAG 9210 Query 391170 CAACGT 391175 || ||| Sbjct 9209 CAGCGT 9204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973173721006700