Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq399 156 5e-33 seq489 149 8e-31 seq381 114 2e-20 seq1426 104 3e-17 seq4791 98.7 1e-15 >seq399 Length=79724 Score = 156 bits (172), Expect = 5e-33 Identities = 251/357 (70%), Gaps = 14/357 (4%) Strand=Plus/Plus Query 7473 CCAAG-TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAAC 7531 ||||| || || || || || |||| |||||| |||||||| || | |||||| | | Sbjct 6331 CCAAGATGGGTGTCTCCGGCCGTCGATTTGACCTCAAAGATGCCGTCCTCAATGGTCAGG 6390 Query 7532 AACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTC 7590 | || |||||||| || || || |||||||| || || || || | ||| ||| | Sbjct 6391 ATGGACACATCAAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACATGGCGT----TCGCC 6446 Query 7591 TTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || | ||||| || | ||||||||||| || ||||| || || || || || || || Sbjct 6447 TTGGCCCTTCTTGTCCAATCCGTACGCGATCGCGGCCGCTGTCGGCTCGTTGATGATGCG 6506 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 || |||||| || ||||| ||| | || || || |||||||| || || ||||| Sbjct 6507 GAGCACGTTCAGACCCGCAATGGTTCCGGCGTCCTTGGTCGCTTGGCGCTGGCTGTCGTT 6566 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| || || || | ||||||||||| ||| | || || | | |||||| Sbjct 6567 GAAGTAGGCGGGCACAGTGATCACCGCGTCCGTCACTGCTTGGCCCAGGAAGGCTTCCGC 6626 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 | || ||||| ||||| || ||||| || || || || | ||||| ||||| Sbjct 6627 AGTCTCCTTCATCTTGGTCAGCACCATTGACGAGATTTC-----CTGCAAATTGTTT 6678 Score = 129 bits (142), Expect = 7e-25 Identities = 212/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | |||||||||||| || | || ||||| || || ||||| || ||||| Sbjct 5752 TCACCAGACAGGATGGCGGCTTGCACAGCGGCACCGTAGGCCACGGCCTCGTCCGGGTTG 5811 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || ||||| || || ||| || | || || |||| | || | |||||| Sbjct 5812 ATGCTCTTGTTCAGCTCCTTGCCGGAGAAGAAGTCGGACAACAGCTTCTGCACCTTCGGG 5871 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||||| || || || | | | ||| || || ||||| | | Sbjct 5872 ATGCGCGTCGAACCGCCGACCAGCACAATGTCGTGGATCTGCGACTTGTCCATCTTGGCG 5931 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || | | || || || || ||||| || ||||||| ||| ||||| ||| Sbjct 5932 TCGCGCAACGCCTTCTCCACCGGATCCATGGTGTTGCGGAACAGGTCGGCGCACAGCTCC 5991 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 ||||| || || ||||| ||| || ||||| || | |||||| | | |||||| || Sbjct 5992 TCAAAGCGAGCCCGGGTGATGTTCGTGTAGAAGTCGATGCCGTCAAACAGCGAATCGATC 6051 Query 7310 TCAATG 7315 |||||| Sbjct 6052 TCAATG 6057 >seq489 Length=102709 Score = 149 bits (164), Expect = 8e-31 Identities = 210/295 (71%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 |||||||||||| || | ||| || |||||||| ||||||| | ||| || | || || Sbjct 39792 GATGGCGGCTTGCACTGCCGCACCATATGCGACGACCTCATCCGCGTTGATGCTCTTGTT 39851 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 ||||| || |||| || |||| || |||| ||| || | |||||| || || || || Sbjct 39852 GAGTTCCTTGCCGTCGAAGAAATCGGACAACAGTTGCTGCACTTTCGGAATCCGCGTGGA 39911 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 ||| ||||||| || || |||| | || |||||| || ||||||| ||| || | || Sbjct 39912 TCCTCCGACCAGCACAATCTCATGAATTTGCGATTTGTCCATCTTTGCGTCGCGCAATGC 39971 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || ||||| ||||| || ||||||| || ||||| |||||||| || | Sbjct 39972 CTTCTCAACAGGGTCCATGGTGTTGCGGAACAGATCGGCACACAACTCCTCAAAGCGAAC 40031 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || || ||| || | ||| || | ||| || | |||||| || |||||| Sbjct 40032 GCGTGTGATGCTGGTGTGGAAGTCGATGCCATCCATCAGCGAATCGATCTCAATG 40086 >seq381 Length=84778 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || || || || || || || || ||||| || || || || || || | | Sbjct 41509 TTTTTGTCCAGTCCATAGGCAATGGCTGCGGCCGTGGGCTCGTTGATGATGCGCACCACG 41450 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||| | || || |||| || || ||||| || ||||| | ||||| |||||| Sbjct 41449 TTCAGGCCCGAGATTGTGCCCGCGTCCTTGGTCGCCTGCCGTTGGGCGTCGTTGAAGTAG 41390 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || || ||||||| | |||| | | || || || || ||||| || || Sbjct 41389 GCCGGCACTGTGACAACCGCGTGCTTGACCTCGTGGCCCAGGTAGGACTCCGCAATCTCC 41330 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 ||||| ||| |||||||| | || | ||| || ||||| ||||| ||| Sbjct 41329 TTCATCTTGCCCAGAACCATGGCGGACACCTCCTCGGCCGCGAACTGCTTC 41279 >seq1426 Length=29504 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || || ||||| |||| || ||||| ||||||||||| ||||| || || || Sbjct 16855 TTCTTGTCCAGTCCGTAGGCGAGTGCGGCCGCGGTTGGTTCATTGATAATGCGCAACAC- 16913 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||| || || || | |||| || || ||||| || ||||| ||||| || || Sbjct 16914 GTTCAGTCCCGCGATGGCACCCGCGTCCTTGGTCGCCTGACGTTGGCCGTCGTTGAAATA 16973 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || ||||| || || ||||| ||| | || || || | ||||| | | Sbjct 16974 CGCGGGAACCGTGACAACTGCGTCGCGGACGGGGTGGCCCAGGTATGCCTCCGCAGTTTG 17033 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||||||| || |||||||| || || ||||| || Sbjct 17034 CTTCATTTTTGTCAGAACCATGGACGAGATCTCCTC 17069 >seq4791 Length=9937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA- 7653 ||||| || || || || |||| || || || ||||| || || || || || | ||| Sbjct 6802 TTCTTGTCCAGTCCATAGGCGAGTGCAGCTGCGGTTGGCTCGTTGATGATGCGCA-ACAC 6744 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||| || ||||| | ||||||| || |||||||| ||||| ||||| || || Sbjct 6743 GTTCAGTCCCGCAATGGCACCCGCATCCTTGGTCGCTTGACGTTGGCCGTCGTTGAAATA 6684 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || || || ||||| ||| | || || |||| || || | | Sbjct 6683 CGCAGGAACTGTGACAACTGCGTCGCGGACAGGGTGGCCCAGGTACGCCTCAGCAGTCTG 6624 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||||||||| |||||||| || |||||||| || Sbjct 6623 CTTCATTTTGGTCAGAACCATGGACGAAATCTCCTC 6588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634334715941000