Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2970 114 8e-21 seq1539 109 4e-19 seq3991 105 4e-18 seq8832 84.2 1e-11 >seq2970 Length=24236 Score = 114 bits (126), Expect = 8e-21 Identities = 171/236 (72%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||||| | | |||||||||||||| || || | |||| || ||||| || || Sbjct 8329 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTT-TGGATGTTGTAATCG 8271 Query 34812 G--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | |||| |||| |||| || || ||||| || ||||| || || ||||| || || Sbjct 8270 GCCAAAG--TTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAG 8213 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCG 34925 ||| | ||||||||||| | ||||| ||| || || |||| || |||| | Sbjct 8212 TCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTG 8157 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | ||||||||||||||| || | ||| |||||||| || ||||| Sbjct 8156 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 105 bits (116), Expect = 4e-18 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | ||||||||| |||| || ||||| || ||||| || || | Sbjct 7873 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGG 7814 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| || || ||||| || ||||| || || ||||| || || Sbjct 7813 CTAAAG--TGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGT 7756 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGG 34926 ||| | ||||||||||| | ||||| ||| || || |||| || |||| | Sbjct 7755 CGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTGC 7700 Query 34927 CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | ||||||||||||||| || | ||| |||||||| || ||||| Sbjct 7699 TCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 96.9 bits (106), Expect = 2e-15 Identities = 167/236 (71%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTG-TGCTTTCTTTCTGAATGTTATAGTC- 34810 |||||||||| | | |||||||||||| | | ||| | |||| || ||||| || || Sbjct 8101 TTCCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTT-TGGATGTTGTAATCG 8043 Query 34811 -CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | |||| |||| |||| || || |||||||| ||||| || || ||||| || || Sbjct 8042 GCCAAAG--TTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAG 7985 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCG 34925 ||| | || |||||||| | ||||| || || | || |||| || ||| Sbjct 7984 TCGGAATACCTTCCTTGTCAGTGATCTT-TGCTTTA---ATATTATCAATTGTGTCAGTA 7929 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | |||||||||||| || || | ||| |||||||| || ||||| Sbjct 7928 CTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | || ||||||||| | || |||||| || ||||| ||||| | Sbjct 14269 TTCCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGG 14210 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| |||| |||||||| ||||| || || |||||||| || | Sbjct 14209 CCAAAG--TGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGG 14152 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCC-- 34928 || | ||||||||||| || || || || || | | | | ||| | Sbjct 14151 TGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCAC--ATTGTCTACAGTATCCGAACTT 14094 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||||||||||||||| || || || |||||||| |||||||| Sbjct 14093 TCACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq1539 Length=61058 Score = 109 bits (120), Expect = 4e-19 Identities = 170/236 (72%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||||| | | |||||||||||||| || || | |||| || ||||| || || Sbjct 9575 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTT-TGGATGTTGTAATCG 9517 Query 34812 G--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | |||| | || |||| |||| |||||||| ||||| || || |||||||| || Sbjct 9516 GCCAAAG--TGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAG 9459 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCG 34925 || | |||||||| || | ||||| ||| || || |||| || |||| | Sbjct 9458 TTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTG 9403 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | ||||||||||||||| || | ||| |||||||| || ||||| Sbjct 9402 CTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 105 bits (116), Expect = 4e-18 Identities = 169/236 (72%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||||| | | |||||||||||||| || || | |||| || ||||| || || Sbjct 9347 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTT-TGGATGTTGTAATCG 9289 Query 34812 G--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | |||| | || |||| || || |||||||| ||||| || || |||||||| || Sbjct 9288 GCCAAAG--TGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAG 9231 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCG 34925 || | |||||||| || | ||||| ||| || || |||| || |||| | Sbjct 9230 TTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTG 9175 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | ||||||||||||||| || || || ||||| || || ||||| Sbjct 9174 CTCTCGACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | ||| ||||| |||| ||| ||||| || || || ||||| | Sbjct 9803 TTCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 9744 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| || || |||||||| ||||| || || |||||||| || Sbjct 9743 CCAAAG--TGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGT 9686 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGG 34926 || | |||||||| || | ||||| ||| || || |||| || |||| | Sbjct 9685 TGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTGC 9630 Query 34927 CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | |||||||||||||| || || || ||||| || || ||||| Sbjct 9629 TCTCGACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq3991 Length=17808 Score = 105 bits (116), Expect = 4e-18 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | ||||||||| |||| ||| ||||| || || || ||||| | Sbjct 17028 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 17087 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| |||| ||||| || ||||| || || |||||||| || Sbjct 17088 CCAAAG--TACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGT 17145 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGG 34926 || | |||||||| || | ||||| ||| || || |||| || |||| | Sbjct 17146 TGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTGC 17201 Query 34927 CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | ||||||||||||||| || | ||| |||||||| || ||||| Sbjct 17202 TCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 105 bits (116), Expect = 4e-18 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | ||||||||| |||| ||| ||||| || || || ||||| | Sbjct 17256 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 17315 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| || || ||||| || ||||| || || ||||| || || Sbjct 17316 CCAAAG--TGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGT 17373 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGG 34926 ||| | |||||||| || | ||||| ||| || || |||| || |||| | Sbjct 17374 CGGTATGCCCTCCTTATCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTGC 17429 Query 34927 CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | ||||||||||||||| || | ||| |||||||| || ||||| Sbjct 17430 TCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 >seq8832 Length=4481 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 34796 CTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAG 34855 ||||||||| ||||| | ||| | ||| |||| ||||| ||||| ||||| || || || Sbjct 601 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAG 660 Query 34856 TCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTAT 34915 |||||||||||| |||| | |||||||| || ||||| || ||| | | Sbjct 661 TCGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCAC 720 Query 34916 CGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGAT 34975 || || | ||| | || | || || || || || || || |||||||| ||||| Sbjct 721 CGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 780 Query 34976 CTGCAT 34981 ||||| Sbjct 781 TTGCAT 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324235875652200