Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3991 111 1e-18 seq1539 109 4e-18 seq78760 93.3 3e-13 seq47329 93.3 3e-13 seq2970 87.8 1e-11 >seq3991 Length=17808 Score = 111 bits (122), Expect = 1e-18 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || || | || ||||| ||| ||||| || |||||||| || | | Sbjct 11839 CCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGG--ATGTTGTAATCGGCCAAA 11896 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 |||| |||||| | ||||||||| |||||||| || | |||||| || || || || Sbjct 11897 GTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATA 11956 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 || || || || || ||||| || || || | ||||||| |||||| Sbjct 11957 CCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCT 12016 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | |||||| ||||| |||||||| |||||||||||||| Sbjct 12017 AGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || | || | ||||||||| || | ||||| |||||||| || || | | Sbjct 17035 CCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGG--ATATTGTAGTCGGCCAAA 17092 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| | |||||| || ||||| || || | ||||||||||| ||||| Sbjct 17093 GTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATG 17152 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429 || || ||||| || ||| ||| || ||||| |||||| || | || | | Sbjct 17153 CCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCC 17212 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || | |||||| || ||||||||||| Sbjct 17213 AAG-GTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || | || | ||||||||| || | ||||| |||||||| || || | | Sbjct 17263 CCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGG--ATATTGTAGTCGGCCAAA 17320 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| |||||||| || ||||| || || | ||| ||||||| || || Sbjct 17321 GTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATG 17380 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429 || || ||||| || ||| ||| || ||||| |||||| || | || | | Sbjct 17381 CCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCC 17440 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || | |||||| || ||||||||||| Sbjct 17441 AAG-GTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 >seq1539 Length=61058 Score = 109 bits (120), Expect = 4e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || | || | ||||||||| || | ||||| |||||||| || || | | Sbjct 9796 CCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGG--ATATTGTAGTCGGCCAAA 9739 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| ||||||||||| ||||| || || | ||||||||||| ||||| Sbjct 9738 GTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATG 9679 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429 || || ||||| || ||| ||| || ||||| |||||| || | || || Sbjct 9678 CCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGAC-CTC 9620 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||| || || || ||||| |||||||||||||| Sbjct 9619 CAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTA-CTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 |||||| || | || | |||||||| | | |||| | | | |||||||| || | || Sbjct 9340 CCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGA-TGTTGTAATCGGCCAAAG 9282 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| ||||||||||| ||||| || || | ||||||||||| ||||| | Sbjct 9281 TGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGC 9222 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCG 563430 | || ||||| || ||| ||| || ||||| |||||| || | || || Sbjct 9221 CCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGAC-CTCC 9163 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || || ||||| |||||||||||||| Sbjct 9162 AGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTA-CTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 |||||| || | || | |||||||| | | |||| | | | |||||||| || | || Sbjct 9568 CCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGA-TGTTGTAATCGGCCAAAG 9510 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| | ||||||||| ||||| || || | ||||||||||| ||||| | Sbjct 9509 TGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGC 9450 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCG 563430 | || ||||| || ||| ||| || ||||| |||||| || | || | | Sbjct 9449 CCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCA 9390 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || | |||||| || ||||||||||| Sbjct 9389 AG-GTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq78760 Length=601 Score = 93.3 bits (102), Expect = 3e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||||||||| || |||||||||||| |||||||| | ||||| |||||||| || | Sbjct 112 TTGATTTTTCTTCGCCTAATATTGCCAAACAAATGCATGTCGGACACTTGCGTTCCACAA 53 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGA 930764 | ||||| ||||| | | ||||||| |||| | |||| Sbjct 52 TAATTGGCGAATCCATCTCCAGATTATTAGAATTTATTGGA 12 >seq47329 Length=867 Score = 93.3 bits (102), Expect = 3e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||||||||| || |||||||||||| |||||||| | ||||| |||||||| || | Sbjct 549 TTGATTTTTCTTCGCCTAATATTGCCAAACAAATGCATGTCGGACACTTGCGTTCCACAA 490 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGA 930764 | ||||| ||||| | | ||||||| |||| | |||| Sbjct 489 TAATTGGCGAATCCATCTCCAGATTATTAGAATTTATTGGA 449 >seq2970 Length=24236 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || | || | ||||||||| || | ||||| || |||||||| |||| | Sbjct 7866 CCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGG--ATGTTGTAATCGGCTAAA 7809 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| |||||||| || ||||| || || | ||| ||||||| || || Sbjct 7808 GTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATG 7749 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429 || || || || || ||| ||| || ||||| |||||| || | || | | Sbjct 7748 CCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCC 7689 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || | |||||| || ||||||||||| Sbjct 7688 AAG-GTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 87.8 bits (96), Expect = 1e-11 Identities = 139/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || |||||||| || | ||||| |||||| ||||||||||| ||||| || Sbjct 8059 TTTGG--ATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGAT 8002 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC-TTGAATTTTTTGTTTTACT-GCC 563403 || | ||| ||||||| ||||| ||||| || || ||| | |||| |||| | Sbjct 8001 CAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGA--TCTTTGCTTTAATATTA 7944 Query 563404 TCAATTGTATCAGT-GTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAAC 563462 |||||||| ||||| | || || || || | ||||| || || | |||||| || Sbjct 7943 TCAATTGTGTCAGTACTCTCGAC-CTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCAC 7885 Query 563463 GAAAATTTGCAT 563474 ||||||||||| Sbjct 7884 AAAAATTTGCAT 7873 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || |||||||| || | ||| | |||||| | ||||||||| ||||| || Sbjct 14455 TTTGG--ATGTTGTAATCGGCCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGAT 14398 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | | ||||||||| || || || || || || || || |||||| || || || Sbjct 14397 CAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTC 14338 Query 563406 AATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAA 563465 | ||||| | |||||| || || | ||||| || || |||||||| ||||| Sbjct 14337 TACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAA 14278 Query 563466 AATTTGCAT 563474 ||||||||| Sbjct 14277 AATTTGCAT 14269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4023979784632250