Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2970 152 4e-32 seq3991 140 3e-28 seq1539 125 6e-24 >seq2970 Length=24236 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || ||||| || || ||||| || || ||||| || ||||||||||| Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||||||| || |||||||| |||||||| || ||||| || || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || |||||| || ||| | |||||||| || || |||| | Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACAT 14316 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| ||||| | |||||| || || || ||||| Sbjct 14315 TCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || | ||| || || ||||| ||||||||||| || ||||| |||| Sbjct 14269 TTCCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGG 14210 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| |||||||| || |||||||| |||| || || ||||| || | Sbjct 14209 CCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTG 14150 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || || || |||||| || ||| | |||||||| || || |||| Sbjct 14149 GGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCAC 14090 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 14089 ATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Score = 132 bits (146), Expect = 4e-26 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| || || ||||| | || ||||| || |||||||||| Sbjct 8101 TTCCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 8042 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| | |||| || | ||| || || ||||| |||| || |||||||| | || Sbjct 8041 CCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 7982 Query 101361 GAATGCCTTCTTTATC-TTGAATTTTTTGTTTTACAATT-TCTACAGTGTCAGACGTTTC 101418 |||| ||||| || || ||| | |||| |||| ||| || | ||||||| | || Sbjct 7981 GAATACCTTCCTTGTCAGTGA--TCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTC 7924 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||||| ||||| |||||||| ||||| || ||||| Sbjct 7923 GACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| ||||||||||| | |||||||| || |||||||||| Sbjct 7873 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGG 7814 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| || | ||| || || ||||| |||| || |||||||| | || Sbjct 7813 CTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 7754 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| || || || || ||| ||| ||| | || | || ||| | || | Sbjct 7753 GTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 7694 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| ||||| |||||||| ||||| || ||||| Sbjct 7693 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| || |||||||| | || ||||| || |||||||||| Sbjct 8329 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 8270 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| | |||| || | ||| || || ||||| |||| || |||||||| | || Sbjct 8269 CCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 8210 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| || || || || ||| ||| ||| | || | || ||| | || | Sbjct 8209 GTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 8150 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| ||||| |||||||| ||||| || ||||| Sbjct 8149 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 >seq3991 Length=17808 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | || | ||| || || ||||| || || ||||| || ||||||||||| Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| |||||||| || |||||||| |||| || || || || ||||| Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || ||||| || ||| | |||||||| ||||| |||| | Sbjct 11954 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACAT 12013 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || | ||||||||| || || ||||| Sbjct 12014 TCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| ||||||||||| | |||||||| |||||||| |||| Sbjct 17028 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 17087 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| |||||||| || || ||||| |||| || || ||||| | | Sbjct 17088 CCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTG 17147 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| || ||||| || ||| ||| ||| | || | || ||| | || | Sbjct 17148 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 17207 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| ||||| |||||||| ||||| || ||||| Sbjct 17208 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || || || ||||| ||||| || || ||||| || |||||||||| Sbjct 12060 TTCCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGG 12119 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | |||| || | ||| || |||||||| ||||| || ||||| || || | Sbjct 12120 CCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTG 12179 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC-C 101419 | || || || || || || ||||| || ||| | ||||| || ||||| |||| | Sbjct 12180 GGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGC 12239 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | | |||| || | ||||| || |||| ||||| ||||| |||||||| Sbjct 12240 ATTCCAAG-GTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| ||||||||||| | |||||||| |||||||| |||| Sbjct 17256 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 17315 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| || | ||| || || ||||| |||| || |||||||| | || Sbjct 17316 CCAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 17375 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| || ||||| || ||| ||| ||| | || | || ||| | || | Sbjct 17376 GTATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 17435 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| ||||| |||||||| ||||| || ||||| Sbjct 17436 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 >seq1539 Length=61058 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| || |||||||| | || ||||| || |||||||||| Sbjct 9575 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 9516 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| |||||||| || |||||||| || | || || ||||| | | Sbjct 9515 CCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTG 9456 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| || ||||| || ||| ||| ||| | || | || ||| | || | Sbjct 9455 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9396 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| ||||| |||||||| ||||| || ||||| Sbjct 9395 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || || || ||||||||||| | |||||||| |||||||| |||| Sbjct 9803 TTCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGG 9744 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| || | ||| || || ||||| || | || || ||||| | | Sbjct 9743 CCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTG 9684 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| || ||||| || ||| ||| ||| | || | || ||| | || | Sbjct 9683 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9624 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| | ||||| ||||| | ||||| || || || ||||| Sbjct 9623 CCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | || ||||| || |||||||| | || ||||| || |||||||||| Sbjct 9347 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 9288 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | |||| || | ||| || || ||||| || | || || ||||| | | Sbjct 9287 CCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTG 9228 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| || ||||| || ||| ||| ||| | || | || ||| | || | Sbjct 9227 GAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGA 9168 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | ||||| ||||| | ||||| || || || ||||| Sbjct 9167 CCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395792900137425