Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_018860.1 Length=156176 Score E Sequences producing significant alignments: (Bits) Value seq86041 82.4 8e-11 seq76998 82.4 8e-11 seq49811 82.4 8e-11 seq46057 82.4 8e-11 seq10978 82.4 8e-11 seq10093 82.4 8e-11 seq6627 82.4 8e-11 seq4515 82.4 8e-11 seq2827 82.4 8e-11 seq2539 82.4 8e-11 seq1917 82.4 8e-11 seq1554 82.4 8e-11 seq347 82.4 8e-11 seq332 82.4 8e-11 >seq86041 Length=563 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 29 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAG 88 Query 100 CTATAAC 106 ||||||| Sbjct 89 CTATAAC 95 >seq76998 Length=612 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 406 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 465 Query 100 CTATAAC 106 ||||||| Sbjct 466 CTATAAC 472 >seq49811 Length=836 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 374 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 315 Query 100 CTATAAC 106 ||||||| Sbjct 314 CTATAAC 308 >seq46057 Length=883 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 752 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 811 Query 100 CTATAAC 106 ||||||| Sbjct 812 CTATAAC 818 >seq10978 Length=3523 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 2358 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 2299 Query 100 CTATAAC 106 ||||||| Sbjct 2298 CTATAAC 2292 >seq10093 Length=4498 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 685 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 744 Query 100 CTATAAC 106 ||||||| Sbjct 745 CTATAAC 751 >seq6627 Length=7242 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 3958 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAG 3899 Query 100 CTATAAC 106 ||||||| Sbjct 3898 CTATAAC 3892 >seq4515 Length=12286 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 3484 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 3425 Query 100 CTATAAC 106 ||||||| Sbjct 3424 CTATAAC 3418 >seq2827 Length=18532 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 145 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 86 Query 100 CTATAAC 106 ||||||| Sbjct 85 CTATAAC 79 >seq2539 Length=20024 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 7760 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAG 7701 Query 100 CTATAAC 106 ||||||| Sbjct 7700 CTATAAC 7694 >seq1917 Length=38546 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 8635 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAG 8576 Query 100 CTATAAC 106 ||||||| Sbjct 8575 CTATAAC 8569 >seq1554 Length=29870 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 534 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 475 Query 100 CTATAAC 106 ||||||| Sbjct 474 CTATAAC 468 >seq347 Length=78057 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 29343 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAG 29284 Query 100 CTATAAC 106 ||||||| Sbjct 29283 CTATAAC 29277 >seq332 Length=67780 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 41 GCTAGTAGGAGTCGAACCTACGACCTTGGGCTTATGAGACCCACGCTACTACC-ACTGAG 99 ||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||||| Sbjct 53064 GCTAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCAACTGAG 53005 Query 100 CTATAAC 106 ||||||| Sbjct 53004 CTATAAC 52998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499007377144000