Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq76222 91.5 2e-13 seq477 87.8 2e-12 >seq76222 Length=617 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 197059 ATGGATTCGTACATCTGGTTGTCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTT 197118 || |||||||| || | | || ||||||||||| || || || || | || ||| Sbjct 450 ATTGATTCGTATTGCTCGGTTTCCGGATTGTAACAAGCAAGCAAATAACCACCATAGACG 391 Query 197119 CCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCAC 197178 || || ||||| || || | || || || || || ||||||| ||||||| Sbjct 390 CCGGTCCTCTTGCCAGTTCCACAATAACCGCCAATGACGACAAGATCCAATGTGTCGCCA 331 Query 197179 ACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCG 197238 | || |||| ||||| ||||| || || ||||| |||| |||||||| | || ||| Sbjct 330 ATTCCCTCCAGATAATCCTTCTTTAGCTTAAGCCAATTTCTGGATCTCTTCGAGATTTCG 271 Query 197239 TAGGTTGCGTTTACGTCCAG 197258 ||||| || ||| ||||||| Sbjct 270 TAGGTAGCATTTTCGTCCAG 251 >seq477 Length=119660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 197059 ATGGATTCGTACATCTGGTTGTCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTT 197118 || |||||||| || | | || ||||||||||| || || || | | || ||| Sbjct 57757 ATTGATTCGTATTGCTCGGTTTCCGGATTGTAACAAGCAAGCAAATAGCCACCATAGACG 57698 Query 197119 CCCGTTCTCTTTCCCA---CCCCGTTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCG 197175 || || || ||| ||| || | | | || || || || || ||||||| |||||| Sbjct 57697 CCGGTCCT-TTTGCCAGTGCCACAATAA--CCGCCAATGACAACAAGATCCAATGTGTCG 57641 Query 197176 CACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATC 197235 | | || |||| ||||| ||||||||||| ||||| ||| |||||||| | || Sbjct 57640 CCAATTCCCTCCAGATAATCCTTCTTCAGTTTAAGCCAATTTCGGGATCTCTTCGAGATT 57581 Query 197236 TCGTAGGTTGCGTTTACGTCCAG 197258 |||||||| || ||| ||||||| Sbjct 57580 TCGTAGGTCGCATTTTCGTCCAG 57558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 675879246962000